K23742

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23742

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23742

Determination of introduced cDNA(s)

  • J033131K12 - Rice Full-length cDNAs - Original: J033131K12

    full reading [+] show sequence

    Nucleotide sequence: J033131K12 - full reading 
    GATATCCTCT CCTACGATAC TGCGCGCTCA GCACAGAAGA GGAAGGTATC 
    TTAACTAGCC CAGGATACCA CCACACACCG AGTACTGTTA CGTGTTCACG 
    GTCTAGCTAA GCAGTGATCA TGGGCTCGGC GGCTGACGGG AGCCTCGCCA 
    ACGAGAAGGC GCCGGCCGAG ACGGTCGGCG TCGGCCGTTA CGTCGAAATG 
    GAGCAGGACG GCGGCGGACC CAGCACCGCA AAGTCCCGGC TCTCCGGCCT 
    TCTCTGGCAC GGCGGCTCAG CCTACGACGC CTGGTTCAGC TGCGCGTCCA 
    ACCAGGTGGC CCAGGTGCTC CTGACGCTGC CCTACTCGTT CTCCCAGCTG 
    GGGATGCTCA GCGGCATACT GTTCCAGCTC TTCTACGGGC TGTTGGGCAG 
    CTGGACGGCG TATCTCATCA GCATCCTGTA CGTGGAGTAC AGGACCAGGA 
    AGGAGAGGGA GAAGGTGGAC TTCAGGAACC ATGTCATCCA GTGGTTCGAG 
    GTGCTGGACG GCCTGCTGGG GAGGCATTGG AGAAACGTCG GCCTGGCCTT 
    CAACTGCACC TTCCTACTCT TCGGCTCCGT CATCCAGCTC ATCGCCTGCG 
    CTAGCAACAT CTACTACATC AACGACAAGC TGGACAAGAG GACGTGGACC 
    TACATCTTCG GCGCGTGCTG CGCGACGACG GTGTTCATCC CGTCGTTCCA 
    CAACTACCGG ATCTGGTCAT TCCTCGGCCT CGTCATGACC ACCTACACGG 
    CCTGGTACCT CGCCGTCGCC TCCCTCATCC ATGGCCAGGT CGATGGAGTG 
    AAGCACTCGG GCCCTACAAA GATGGTCCTC TACTTCACCG GGGCCACAAA 
    CATTCTCTAC ACCTTCGGTG GGCACGCTGT TACTGTGGAG ATCATGCACG 
    CGATGTGGAG GCCGCAGAAG TTCAAGGCGA TCTACCTGAT GGCGACGCTG 
    TACGTGCTGA CGCTGACGCT GCCGTCGGCG GCGAGCGTGT ACTGGGCGTT 
    CGGGGACGAG CTGCTCACGC ACTCGAATGC GCTGGCGCTG CTGCCGCGCA 
    CGGCGTTCCG GGACGCCGCC GTGGTGCTCA TGCTCATCCA CCAGTTCATC 
    ACCTTCGGCT TCGCCTGCAC GCCGCTCTAC TTCGTCTGGG AGAAGCTCAT 
    CGGACTCCAC GACTGCCGCA GCCTCTTCAA GCGCGCCGCC GCGAGGCTCC 
    CCGTCGTCGT GCCCATCTGG TTCCTCGCCA TCATCTTCCC CTTCTTCGGG 
    CCCATCAACT CCGCCGTCGG CTCCCTCCTC GTCAGCTTCA CCGTCTACAT 
    CATCCCCGCC CTCGCGCACA TGATCACCTT CCGCTCCGCG CACGCTCGTG 
    AGAACGCCGT GGAGCCGCCG CCGCGGTTCG TGGGGCGATG GACGGGCACG 
    TTCATCATCA ACGCGTTCGT GGTGGCGTGG GTGCTGGTGG TCGGCTTCGG 
    GTTCGGCGGC TGGGCCAGCA TGACCAACTT CGTCCGCCAG ATCGACACGT 
    TCGGGCTCTT CACCAAGTGC TACCAGTGCC CGCCGCCCCC TCTGCCGCCG 
    GCGGGCGCCG CTCCGAACGC CACCTGGCCG CCGTTCCCGG CGACGCCGTT 
    CAACGCCACC ACCGCCGGCC TCGCTCCGGC CCCTGCTCCT TCGCCGGCGC 
    ATTTCTTCGG CCGCCACCAC CGGCATCACA GCCACGGGCT CTGAACACTG 
    AAATGTACGT ACCAGGGCAA TGCTCGAGCT TTGGTTTAGC TATAGTTGTT 
    CACTAGCGCC GTCACTAATT AGTCTTAGCT TAGCACAAAG CTGCATCTTC 
    TCTAGCTATC AGTAGCATGT CAGTCAGACG GAGTATCCCG TTTCAAGTTC 
    CTTGGTTCTG TACTGCCTCC TGGCGTGGAG CTCAAAAAAC GAACAGAAAA 
    AAAGGGAATG TTGCTACGGC CGCAGATGCA AGAGCCAGCT AATCTAGCCT 
    CTTTACTTTC TCTC

    Gene models with high sequence identity

    1. AT2G21050.1 [+] show detail - like AUXIN RESISTANT 2
      E-value: 0; Score: 798.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AUX1-LIKE AMINO ACID PERMEASE 0
    HMMPanther AMINO ACID TRANSPORTER 0
    HMMPfam Amino acid transporter, transmembrane 1.1e-73

    See the detailed result >

    AT2G21050.1

    Model type
    Protein coding
    Short Description
    like AUXIN RESISTANT 2
    Curator Summary
    Encodes LAX2 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
    Computational Description
    like AUXIN RESISTANT 2 (LAX2); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUX1 3 (TAIR:AT1G77690.1); Has 1017 Blast hits to 1012 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 224; Plants - 668; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR