K23744

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23744

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23744

Determination of introduced cDNA(s)

  • J033135H09 - Rice Full-length cDNAs - Original: J033135H09

    full reading [+] show sequence

    Nucleotide sequence: J033135H09 - full reading
    GACCATCCTT AACCGAGAAG CATAGCTCGC TTCCACGCAA GATTAAAAGC 
    TGCCCCTCTT GCTGCTGCAG ACTGCAGTCC TGCAAGATCA GCGCCTGAAG
    CAAGAAGCGA AGAATCAAAC GAGAGCCTAG CAGCGTAGCA GATCGATCGA
    TCGATCGATA TTATGGAGGC GCGAGGAAGC AGAGGAATGC GGCTGTGGCT
    CCTGTCCGTG GCGGTGATGG CCATGGCGAT GGCGACGAGG TCGCAGGCGC
    AGCTGCAGGT CGGGTACTAC GACACGCTGT GCCCGGCGGC GGAGATCATC
    GTGCAGGAGG AGGTCAGCAA GGCGGTGTCC GGGAACCCCG GCATGGCCGC
    CGGCCTCGTC CGTCTCCACT TCCACGACTG CTTCGTCAGG GGGTGCGACG
    CGTCGGTGCT GCTGGACTCG ACGCAGGGGA ACAGGGCGGA GAAGGACGCG
    CCCCCGAACA CGAGCCTCCG CGGCTTCGAG GTCATCGACA GCGCCAAGTC
    CCGCCTCGAG ACGGCCTGCT TCGGCGTCGT CTCCTGCGCC GACGTCCTCG
    CCTTCGCCGC CCGGGACGCC CTCGCGCTGG TGGGAGGGAA CGCGTACCAG
    GTGCCGGGGG GGAGGAGAGA CGGCAACGTG TCGGTGGCGC AGGAGACGAA
    CGGGAACCTG CCGCCGCCGT CGGCGAACGT GGCGCAGCTG AACCAGATGT
    TCGGCGCCAA GGGGCTCACC CAGGCGGAAA TGGTGGCACT GTCGGGCGCG
    CACACCATCG GCGTGTCGCA CTGCAGCTCC TTCAGCAACC GCCTCTACTC
    GTCGGGCCCC AACGCCGGGC AGGACCCCAG CATGGACCCC AGCTACGTCG
    CCGCGCTGAC GACGCAGTGC CCGCAGCAGC AGGGGCAGCC CGCGGCGGGG
    ATGGTGCCCA TGGACGCCGT CACGCCCAAC GCCTTTGACA CCAACTACTA
    CGCCGCCATT GTCGCTAACC GGGGATTGCT CAGCTCCGAC CAGGCGCTCC
    TCGCCGACCA GACCACCGCC GCGCAGGTCG TCGGCTACAC CAACAACCCG
    GACTCGTTCC AGACCGACTT CGCCGCCGCC ATGGTCAAGA TGGGCTCCAT
    CGGCGTGCTC ACCGGCAACG CCGGCACCAT CAGGACAAAC TGCAGGGTGG
    CCAGCTGATC GATCGACCTA AGCATGATGT ATAGCTCGTG GCAGGCTTGT
    GTGAGTTGGG ATTGTGATGA GATTAAATTG AAAATTGTAC GTACGACGAC
    GTAGCTAGCT AGATAGAGTG TTGTAAACTT ATTTGTTTGA TCATTCATTT
    GGTCTCTCTG TATTACGTGC TAGCTAGCTC AATTAGCTTG CTCGTGCGTC
    CCTTCTCCCC TCTTCCCGTA GATTATTTTA CTCTGCACTC TGTACTTCTC
    TGTGACATTA TAGTGACAAT ATAGTTTTAT TGTTCCATCT TTTAACCTCT
    GCATGTACAT GCTGCGAATA GAAAGCCAGA ATAAGAAACC TATTTAAGCT
    CCAACC

    Gene models with high sequence identity

    1. AT1G05260.1 [+] show detail - Peroxidase superfamily protein
      E-value: 6e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1e-77
    superfamily Haem peroxidase 2.7e-110
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    Gene3D no description 1e-58
    ProfileScan Haem peroxidase, plant/fungal/bacterial 76.642
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Plant peroxidase 7.8e-58
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.4e-29

    See the detailed result >

    AT1G05260.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Curator Summary
    Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
    Computational Description
    RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR