K23746

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23746

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23746

Determination of introduced cDNA(s)

  • J013098C06 - Rice Full-length cDNAs - Original: J013098C06

    full reading [+] show sequence

    Nucleotide sequence: J013098C06 - full reading 
    GAGATGATCT GACCAAGAGG AGAAGAAGAA GAGAGAGGAT CCCAACCCCA 
    CCACCTCTCC TCCTCCTCCT CTCTCTCTCT CCGATCTGCC TCGCCGCCGC 
    CGCGGCTGCT CTTCTCCTCT CGCCTCGCCT CGTGCGCGCG GCGAGTTCGA 
    CCTCCTCCTC CTCCTCTCCG AGCCCCCGCC TCCCCTGGCT GCGGGCGGGG 
    GGTTTCGAGG GGGTGGACGC GGCCTCCGTG TCGGCTTCGG CTCGGATCGA 
    ATTCAAAGAA GAGGTTGGAA ACCTTGGTGG TGTAGTTAGT GCCACCGCCC 
    CTGTCTGGAG TGGCATGTAG TTTTCGCAAG GCTTTGTTTA TGATTTTGTC 
    GATGGCGAGG AGATGAAGGC ATCGCAGGTG TGGCAACGGG GCAGCAAGGA 
    CATGACAGCC ATGCCCCCTC CGCGCCAACG AGGCGCCGCA AGAAGCCCAT 
    GTGGATAATC GTGCTGCTGT CGCTGGTGTG CGTCGCGCTC ATCGGGGCCT 
    ACGCGTACCC TCCGCGCCGC TACTCCGCGT GCTACTTCTT CGCTTCGAGC 
    GTCTGCACTC CTTTCAAGGA TTGGCTCCCT ACTGTGACCC GACGGGAGCG 
    AACAGACGAA GAGATCGTCT CGTCTGTTGT TATGAGGGAT CTCCTTGCAA 
    TGCCCATGCC TGTCTCGAAG AATCCAAAGA TTGCCTTGAT GTTCTTAACA 
    CCAGGTTCAT TGCCCTTTGA GAAACTATGG GAGAAATTTC TACAGGGTCA 
    TGAGGATCGA TATTCCATTT ATATCCATGC ATCGCGTGAA AGACCTGTAC 
    ATTCTAGTTC TTTGTTTGTT GGCCGAGAGA TTCATAGTGA AAAGGTTGTA 
    TGGGGGAGGA TTTCAATGGT TGATGCGGAG AAGAGGCTGC TAGCAAATGC 
    ATTGGAAGAT GTTGATAATC AATTTTTCGT CTTGCTATCG GACAGCTGTG 
    TTCCACTACA TACATTTGAT TACATATATA ATTTTTTGAT GGGAACAAAC 
    GTCAGCTTCA TTGATTGCTT CCTTGATCCT GGACCACATG GAAGCGGAAG 
    GTATTCTGTG GAAATGCTCC CTGAAATAGA ACAGAGGGAC TTCAGGAAGG 
    GTGCCCAGTG GTTTGCTGTA ACACGAAGGC ATGCTTTACT GATTTTAGCA 
    GACCACCTTT ACTACAATAA GTTCGAGCTG TATTGCAAGC CAGCAGAGGG 
    ACGCAACTGT ATTGCTGATG AGCATTATTT GCCAACCCTC TTCAATATGG 
    TAGATCCTGG TGGAATCTCT AATTGGTCAG TGACACATGT TGATTGGTCT 
    GAAGGAAAAT GGCATCCAAG GTCGTATAGA GCTATTGATG TTACCTATGC 
    ACTCTTGAAG AACATAACGG CTATCAAAGA GAACTTCCGT ATTACAAGTG 
    ATGATAAGAA AGTTGTGACA ATGACACCCT GTATGTGGAA CGGAACAAAG 
    AGACCATGCT ACCTTTTTGC TAGAAAGTTT TACCCAGAAG CTCTCAACAA 
    CCTACTGAAG CACTCCAGCT ACACGTCCAC TTGAGCTCTA CACGATTCTT 
    TGCTTTTGGC CTAGGAATTC CCTAGGATTT ATTTCTTCTT CTATTTTATG 
    TAAATTGTGA AATTGATATT TAGCTGCGTA ACACAGATTC AGGGCCAGAG 
    ACATATCAAC GTTGCTGCGG CAATGGCGAT GTCTTGCAAA TTCTGAGTCC 
    CTAGGTAGGG CTGAGGCGAT ATTTATTTAG TTTTGATACA GCCCTCATTG 
    TAACATGTTG TGCTTTTTTG TATGTTGCTA TGAGCTGCTC TTCACGCCCA 
    CATTTTCTCT CTTTTCTTTC TAGTTTCCTA GCTCCTCCCA TCTGTTGAGG 
    AATAGGCGTT TTTGTCAGAT TGGAACTGTT ATTATATGAT CCATTCTTTG 
    TAGACATGAA GAGATTATTA TGACACCAGC ACAACCTTAC AGTTAATCTG 
    CCCTCTTGAG TTTTGTTT

    Gene models with high sequence identity

    1. AT4G31350.2 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
      E-value: 3e-136; Score: 483.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Core-2/I-Branching enzyme 2.4e-78

    See the detailed result >

    AT4G31350.2

    Model type
    Protein coding
    Short Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    Computational Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT2G19160.1); Has 585 Blast hits to 585 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 553; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR