K23746

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23746

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23746

Determination of introduced cDNA(s)

  • J013098C06 - Rice Full-length cDNAs - Original: J013098C06

    full reading [+] show sequence

    Nucleotide sequence: J013098C06 - full reading
    GAGATGATCT GACCAAGAGG AGAAGAAGAA GAGAGAGGAT CCCAACCCCA 
    CCACCTCTCC TCCTCCTCCT CTCTCTCTCT CCGATCTGCC TCGCCGCCGC
    CGCGGCTGCT CTTCTCCTCT CGCCTCGCCT CGTGCGCGCG GCGAGTTCGA
    CCTCCTCCTC CTCCTCTCCG AGCCCCCGCC TCCCCTGGCT GCGGGCGGGG
    GGTTTCGAGG GGGTGGACGC GGCCTCCGTG TCGGCTTCGG CTCGGATCGA
    ATTCAAAGAA GAGGTTGGAA ACCTTGGTGG TGTAGTTAGT GCCACCGCCC
    CTGTCTGGAG TGGCATGTAG TTTTCGCAAG GCTTTGTTTA TGATTTTGTC
    GATGGCGAGG AGATGAAGGC ATCGCAGGTG TGGCAACGGG GCAGCAAGGA
    CATGACAGCC ATGCCCCCTC CGCGCCAACG AGGCGCCGCA AGAAGCCCAT
    GTGGATAATC GTGCTGCTGT CGCTGGTGTG CGTCGCGCTC ATCGGGGCCT
    ACGCGTACCC TCCGCGCCGC TACTCCGCGT GCTACTTCTT CGCTTCGAGC
    GTCTGCACTC CTTTCAAGGA TTGGCTCCCT ACTGTGACCC GACGGGAGCG
    AACAGACGAA GAGATCGTCT CGTCTGTTGT TATGAGGGAT CTCCTTGCAA
    TGCCCATGCC TGTCTCGAAG AATCCAAAGA TTGCCTTGAT GTTCTTAACA
    CCAGGTTCAT TGCCCTTTGA GAAACTATGG GAGAAATTTC TACAGGGTCA
    TGAGGATCGA TATTCCATTT ATATCCATGC ATCGCGTGAA AGACCTGTAC
    ATTCTAGTTC TTTGTTTGTT GGCCGAGAGA TTCATAGTGA AAAGGTTGTA
    TGGGGGAGGA TTTCAATGGT TGATGCGGAG AAGAGGCTGC TAGCAAATGC
    ATTGGAAGAT GTTGATAATC AATTTTTCGT CTTGCTATCG GACAGCTGTG
    TTCCACTACA TACATTTGAT TACATATATA ATTTTTTGAT GGGAACAAAC
    GTCAGCTTCA TTGATTGCTT CCTTGATCCT GGACCACATG GAAGCGGAAG
    GTATTCTGTG GAAATGCTCC CTGAAATAGA ACAGAGGGAC TTCAGGAAGG
    GTGCCCAGTG GTTTGCTGTA ACACGAAGGC ATGCTTTACT GATTTTAGCA
    GACCACCTTT ACTACAATAA GTTCGAGCTG TATTGCAAGC CAGCAGAGGG
    ACGCAACTGT ATTGCTGATG AGCATTATTT GCCAACCCTC TTCAATATGG
    TAGATCCTGG TGGAATCTCT AATTGGTCAG TGACACATGT TGATTGGTCT
    GAAGGAAAAT GGCATCCAAG GTCGTATAGA GCTATTGATG TTACCTATGC
    ACTCTTGAAG AACATAACGG CTATCAAAGA GAACTTCCGT ATTACAAGTG
    ATGATAAGAA AGTTGTGACA ATGACACCCT GTATGTGGAA CGGAACAAAG
    AGACCATGCT ACCTTTTTGC TAGAAAGTTT TACCCAGAAG CTCTCAACAA
    CCTACTGAAG CACTCCAGCT ACACGTCCAC TTGAGCTCTA CACGATTCTT
    TGCTTTTGGC CTAGGAATTC CCTAGGATTT ATTTCTTCTT CTATTTTATG
    TAAATTGTGA AATTGATATT TAGCTGCGTA ACACAGATTC AGGGCCAGAG
    ACATATCAAC GTTGCTGCGG CAATGGCGAT GTCTTGCAAA TTCTGAGTCC
    CTAGGTAGGG CTGAGGCGAT ATTTATTTAG TTTTGATACA GCCCTCATTG
    TAACATGTTG TGCTTTTTTG TATGTTGCTA TGAGCTGCTC TTCACGCCCA
    CATTTTCTCT CTTTTCTTTC TAGTTTCCTA GCTCCTCCCA TCTGTTGAGG
    AATAGGCGTT TTTGTCAGAT TGGAACTGTT ATTATATGAT CCATTCTTTG
    TAGACATGAA GAGATTATTA TGACACCAGC ACAACCTTAC AGTTAATCTG
    CCCTCTTGAG TTTTGTTT

    Gene models with high sequence identity

    1. AT4G31350.2 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
      E-value: 3e-136; Score: 483.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Core-2/I-Branching enzyme 2.4e-78

    See the detailed result >

    AT4G31350.2

    Model type
    Protein coding
    Short Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    Computational Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT2G19160.1); Has 585 Blast hits to 585 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 553; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR