K23748

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23748

Determination of introduced cDNA(s)

J013078J21 - Rice Full-length cDNAs - Original: J013078J21

full reading [+] show sequence

ACACACAAGA AATCTCACCC AAAAAAAAAA AACCAACCAA TCAAAAACCA 
AACCATGGCG CGCCACCGCC ACCGCCTCGC CGCCGCCGCG GCGCTCCTCC 
TCCTCCTCCT CTCCTCCGCC GCCGCGCTGT CGTCATCGGC GGCGGAGGGG 
GAGGAGGACC CGCTCATCGA GCAGGTGGTC GGCGGCGGGG AGGAGGAGGA 
CGCGCAGCTG GACGCGGAGG CGCACTTCGC GAGCTTCGAG CGGCGGTTCG 
GGCGGACGTA CCGGGACGCC GGCGAGCGCG CGTACCGGAT GTCCGTGTTC 
GCCGCCAACC TCCGCCGCGC GCGGCGGCAC CAGCGGCTGG ACCCCACCGC 
GACGCACGGC GTCACCAAGT TCTCCGACCT CACCCCGGGC GAGTTCCGCG 
ACCGCTTCCT CGGCCTCCGC CCCCCATCCT CCCCACCGAC GGCCTCCCCG 
ACGACTTCGA CTGGCGCGAG CACGGCGCCG TCGGCCCCGT CAAGGACCAG 
GGTTCGTGCG GATCGTGCTG GTCGTTCAGC ACGTCGGGGG CGCTGGAGGG 
GGCGCACTTC CTCGCCACGG GGAAGCTGGA GGTGCTCAGC GAGCAGCAGA 
TGGTCGACTG CGACCACGAG TGTGATGCAT CAGAATCGCG CGCATGCGAC 
TCAGGATGCA ACGGTGGCTT GATGACCACA GCCTTCAGCT ACCTCATGAA 
ATCCGGTGGC CTACAGAGCG AGAAAGATTA CCCGTACGCT GGACGAGAAA 
ACACCTGCAA GTTCGACAAG TCCAAAATCG TTGCCCAAGT AAAGAACTTC 
AGTGTGATCT CCGTCAACGA AGATCAAATT GCTGCCAACC TCGTCAAACA 
TGGCCCTCTT GCAATTGCAA TCAATGCGGC CTACATGCAG ACATACATCG 
GCGGCGTGTC GTGCCCCTTC ATCTGTGGGA GGCACCTTGA CCATGGTGTC 
CTCCTTGTTG GCTACGGATC GGCAGGATAC GCACCGATCC GCTTCAAGGA 
GAAGCCGTAC TGGATCATCA AGAACTCGCG GGGCGAGAAC TGGGGGGAGA 
AGGGGTACTA CAAGATCTGC AGGGGACCTC ATGACAAGAA CAAGTGCGGT 
GTTGATTCCA TGGTCTCCTC AGTGACTGCC ATCCATACCT CCAAAAAGGA 
GGAGTAGGAT AGGATTAGTC TCCTCTTTGT CTTTGCATAC CACACACTTT 
TTAATTTGCT CTTTTGTGGT TGAAACTGTT AGTGGTTAGG ACCATTCTGT 
GGTGTTGCTC GATTGCTATT TATGATCAGC AAAAACTGTG AAAACTTCCT 
TTACTTGATG TAATAGTACA TATTTGTTCG GACC

Gene models with high sequence identity

AT4G39090.1 [+] show detail - Papain family cysteine protease
E-value: 1e-127; Score: 105.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Peptidase C1A, papain C-terminal	2.3e-10
FPrintScan	Peptidase C1A, papain C-terminal	2.3e-10
FPrintScan	Peptidase C1A, papain C-terminal	2.3e-10
HMMSmart	Proteinase inhibitor I29, cathepsin propeptide	1.5e-17
HMMSmart	Peptidase C1A, papain C-terminal	4.4e-103
HMMPanther	CYSTEINE PROTEASE	1.3e-168
HMMPanther	Peptidase C1A, papain	1.3e-168
HMMPanther	CYSTEINE PROTEASE	2.6e-31
HMMPanther	Peptidase C1A, papain	2.6e-31
superfamily	Cysteine proteinases	1.1e-12
superfamily	Cysteine proteinases	1.4e-88
HMMPfam	Proteinase inhibitor I29, cathepsin propeptide	4.9e-11
HMMPfam	Peptidase C1A, papain C-terminal	3.3e-70
Gene3D	no description	2.8e-10
Gene3D	no description	8e-76
PatternScan	Peptidase, cysteine peptidase active site	0
PatternScan	Peptidase, cysteine peptidase active site	0

See the detailed result >

AT4G39090.1

Model type: Protein coding
Short Description: Papain family cysteine protease
Curator Summary: Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R
Computational Description: RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR