K23814

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23814

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23814

Determination of introduced cDNA(s)

  • J013129J01 - Rice Full-length cDNAs - Original: J013129J01

    full reading [+] show sequence

    Nucleotide sequence: J013129J01 - full reading 
    GTCTGGTCTC GGTGGAATCG CAGCGGCCTG CAGATCTCTC TTCTCCGACT 
    CAATCATTCG CCCTGCGCTG CACAAGGTGA GAGGAAGGAA GGGAAAACCA 
    ATTGGATCTC TCAATTAATC GGGGTGTGGG AGCAAGCCGC TTCAACGCAA 
    TTACGCAACG CCGGAGGTAG TCAGGCATGA TTCATGCAAT ACACTGACTG 
    AAAAAATAAT ATGGCTTCAA AAGCCATTAA AAGGAAGCCT TACACTGCTG 
    ATATTGATAG AAGCGAAAAA CAGATGGAGA CGATCATACC AGATTCTGTA 
    AGAGAACCTC TTCTAGGAAA CAGAACTCAT GAAAGCAAAT CCGAGAGACA 
    TGAGCCTAAT ATGCAGCCAA ATTTATGGGA TGGAAAAGGA CAAGAGCGCC 
    TTGGTTGGAT GCATATTATA TCGACTTTTA TTGCTCAATC TGTAAGAAAG 
    ATAGGAAATG CGCTCTCTCA GTTTGGACCA TTGCTAGCAA AGTTCTTTAG 
    TAGGTCTTGT GCTTCCCATG GTTCACATGA TGAACAGGCA GTTCTACTTG 
    ATCTCAGTCC ACTACAGGAA GAGAGACTGA GGTTCTTGAG ACAAAGATTA 
    AATGTGCCAT TTGACAGTTC CTCTGTCAAG CATCAGGATG CTCTGAAAGA 
    ACTTTGGAGA TTAGCTTATC CCAGCCGACA ACTTCCTCCT CTGAAATCAG 
    ATCTATGGAA GGAGATGGGC TGGCAGAATT CTGATCCAGC AACTGATTTT 
    AGAGCAGGGG GGTTCATGTC CTTGGAAAAT TTAATATATT TTGCTAGAAA 
    TTACCCAGAT TCCTTTCACA GTTTATTACA CAAGGCGGAT GGTAAGAGAT 
    CTGAATGGGA ATATCCCTTT GCAGTAGCTG GCGTGAACAT ATCTTATATG 
    TTAGTGCAAA TGTTGGATCT GCAATCAGGA AAAATGGGCA CAAAAGTCAG 
    TTCTCAATTT GTTCAACTAC TTAGAGAAGA CGAGATGGCT TTTGATAACC 
    TTTTCTGTAT GGCCTTTCAG ATGCTTGACG CTCAGTGGCT CACAAGGCAA 
    GCTAGTTATA TGGAATTCAA TGAGGTTCTA AAGTCCATGC GTATTCAGTT 
    AGAACAAGAA CTTACTATCG GAAGCATTTC TTGTGTTCAG GAGATGCCAT 
    CATTTAGGTT GCTAAAAAGG TAGCCATGTT TGTTGTTTAC AGAAAGGAGT 
    GTATCTTACT TGTCAGTAGG ATCTTGTGCA TACTTCCGAT TCTTTCATTG 
    GTTGTACAAC ATGACACACT GTAAGATTAT TTATCATAGA ATAATAAACC 
    CAGTATATAT CTGGTACTTT GGT

    Gene models with high sequence identity

    1. AT3G03610.1 [+] show detail - ELMO/CED-12 family protein
      E-value: 8e-85; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Engulfment/cell motility, ELMO 30.103
    HMMPfam Engulfment/cell motility, ELMO 1.6e-51
    HMMPanther CELL MOTILITY PROTEIN RELATED 1.7e-112
    HMMPanther ENGULFMENT AND CELL MOTILITY 1.7e-112

    See the detailed result >

    AT3G03610.1

    Model type
    Protein coding
    Short Description
    ELMO/CED-12 family protein
    Computational Description
    ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT1G03620.1); Has 825 Blast hits to 825 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 44; Plants - 173; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR