K23821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: K23821

Determination of introduced cDNA(s)

  • J033093O20 - Rice Full-length cDNAs - Original: J033093O20

    full reading [+] show sequence

    Nucleotide sequence: J033093O20 - full reading 
    GACTCTCCAC CCACACCTCC ACTCCACTCC ACGCCATTTT TTCGCTCGCT 
    CGCTCGCCTC GTGCCCACGT TCGCCGAGGG GAGTAGCGTT AGCGTAGCGT 
    GCTCTTCGGG GGCGGGTTGG TTCGCGATGG GGGCGTCGGG GAAGTGGATC 
    AGGACGCTGG TGGGGCTGAG GCCGGCGGCG GAGAGGGAGA AGGAGAGGGG 
    CGGCGGCGGG GGGAAGGGGA GGAAGTGGAG CAGACTGTGG AGGAGCTCGT 
    CGTCGCAGAG GGGCGGCGGG AACGCGTCGG CGTCGGAGGT GTACTCCGAG 
    ACGTCGTCCT CCGCCGACGC GCTCAGCTCC GTCGTCGCGG CCGTCGTCCG 
    CGCGCCGCCC AGGGACTTCC GGCTCATCAG GCAGGAGTGG GCCGCCGTCC 
    GCATCCAGAC CGCCTTCCGC GCCTTCCTGG CGAGGCGGGC GCTGAGGGCG 
    CTGCGAGGGA TCGTGCGGCT GCAGGCGCTG GTGCGCGGCC GCCGCGTGCG 
    CAAGCAGCTG GCCGTCACGC TCAAGTGCAT GCAGGCGCTC GTCCGGGTGC 
    AGGCTCGCGC GCGGGATCGG CGAGCCAGGA TCTCGGCCGA CGGCCTCGAC 
    TCTCAGGACA TGCTCGACGA GCGCGGCGGA CGCGTCGATC ATGTCAAGGA 
    AGCCGAGGCA GGATGGTGTG GTAGTCAAGG CACTGCGGAT GACGTGAGAT 
    CGAAGATACA CATGAGGCAT GAGGGTGCAA TCAAGAGAGA AAGGGCACGT 
    ACTTATGCTC AATCCCACCA GAGGTGTTCA AACCACGGTG GAAGACCCAG 
    CTCCCCTGCT GTATCTCTCA AGCACCATGG GAATGGTGCT ACTAGGAGCA 
    ACCATAGTTG GAGCTATCTG GAAGGGTGGG TGGCCACAAA ACCTTGGGAG 
    AGCCGACTGA TGGAGCAAAC CCACACCGAA AACTCCACCA ATTCGCGGTG 
    TTCAGAGAGC GTCGAGGAAG TAAGCGTTGG CGGCCCGAAG CTTTCTGATG 
    CAAGCTCGGT CAAGATCAGA AGGAACAATG TTACAACAAG GGTGGCAGCA 
    AAGCCTCCCT CCATGATCTC GGCTACCTCT TCTGATTTCG TGTGCGATGA 
    GAGCTCCCCA TCTACATCTT CTGTGACTCC ACTGTCAGCC AACAATTCCC 
    TGGCAACAGA GAGAAGATCT GATTGTGGTC AGGTTGGTGG ACCGAGCTAC 
    ATGAGCCTGA CCAAATCAGC CAAGGCAAGG CTGAGTGGCT ATGGCTCTCA 
    CAAGCCACCT CTTCAAAGGC AAAGGTCCGG TGATCTCCTC CATCACAACA 
    ACAGGATGGC ATTCTCTTCC ATAGATGTTC AGAGCACTGC TGGCTCGGAG 
    GTCTCAGTAA CTTCAAAGAG GTTAAACAGT TTGGCTCTTA AAGGTCGAGC 
    CACAAGAAGT TTAGACAAGG AGAATGAGAG ACGGCCTAGT TCCTTGCTTT 
    AGGATACGCA CCCTAATTGG TCCCTCAAGA TATTTTAGCG GAGTCTTTAG 
    ATGTTTTACC TGTACGTATC TGCTGGTTTC AATGTCTCAT TGCTTATTTT 
    GCTCTCTATA TTTATGGTGT ACAAATGTGA AACTCC

    Gene models with high sequence identity

    1. AT2G26180.1 [+] show detail - IQ-domain 6
      E-value: 1e-46; Score: 184.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan IQ calmodulin-binding region 9.176
    ProfileScan IQ calmodulin-binding region 7.583

    See the detailed result >

    AT2G26180.1

    Model type
    Protein coding
    Short Description
    IQ-domain 6
    Computational Description
    IQ-domain 6 (IQD6); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 8 (TAIR:AT1G72670.1); Has 885 Blast hits to 872 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 10; Plants - 828; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR