K23826

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23826

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23826

Determination of introduced cDNA(s)

  • J033107I23 - Rice Full-length cDNAs - Original: J033107I23

    full reading [+] show sequence

    Nucleotide sequence: J033107I23 - full reading 
    GAGGTCAGGA GAGGCTCCAA CGGTCACATT ATCCTCGCTG ACTCCGCCGC 
    GCGCCGCGTG CTCGCCTTCC TCCCCCTCGC GCCACCACCG CCGCCGCCGA 
    GTCCTCGTCA CCGGAGAGCG AGGGGGTCTC CGCCGTGGTC GCCTGCGCGC 
    TACGCGGCGA CGCTGCCGGC TTCCTTCCGC CGGAGTCAAC CTTGGGGGTA 
    AGGATTGCTG CAAACAACTC CAGTTTCTGA ATAAAGACAG TGCCGATATT 
    AATGGATAAG AAACAGACCT CGTTAGGCAC TCCTGTCTAC AGGACAAATC 
    CCTTCGATTC TGACTCTGAT TCTGAAGTGC CCTCAAGACC GTCAAGGGCA 
    CAATCTGTCC CAGTGCGACG CACAGATCAA TCTATACAAG AGCTGGAGGA 
    CTATGCTGTT GATAAAGTAG AAGAAACATC ACGCAAAGTA AATGATTGTG 
    TCAGAGCCGC TGAAGCAATC AGAGAAGATG CTACAAAAAC ACTGGTTACT 
    TTGCATCGTC AAGGTGAACA GATCACCCGA ACTCATCGAG TAGCCGCGGA 
    TATTGAACAC GATCTTAGTA TGAGTGAGAA GCTTTTGGGA AGTCTAGGGG 
    GGCTGTTTTC CAAGACATGG AAGCCAAAGA GAAACCAACA GATAAAAGGA 
    CCGATTTCAC AAAATAATTC TTTCACAAGT TCAGCGAACC ACATGGAACA 
    GAGGCAGAGG CTAGGTATTT CCTCAACACG TCAGCCATCT CCAAATCAAG 
    TACATCGTTC ACCTGCAACT GCAATCGAGA AAGTTCAGGT TGAGATAGCA 
    AAGCAGGATG ATGCGCTCTC AGACTTGAGT AACATGTTGG GAGAGCTGAA 
    GGGTATGGCA TTGGATATGG GCACAGAAAT TGAAAGGCAA AATAAATCAC 
    TGGATGCTTT CGGTGATGAT GTTGATGAAC TGAACTTCAG AGTTAAAGGG 
    GCAAACCAAC GGGGACGCCG GTTATTGGGC AAATGATGCC ATCAGGTTGT 
    CGAACCACAG CAACTCTGTT TCTAGCAGTT TTCTCCATCC CATGGGATTC 
    AGGACTTGTG AGTGCGATTA GCAGATGCGC CTACTTCATC TGGATATTCT 
    GTCGTGTCTG AATTCTGAGC AAATATTCAG ATTCCCGTGT TGTGTTGTTG 
    TATGAGAAAT CGTCATATAC ACTTGTTGTA TGATAAGTTG ATAGCTTCAA 
    TTACTTGGTG TAGGACATAA CCACCATTCC CCTTTTCTCT TAGAATCTTG 
    ATGTAATCTG TACTCCTAAA TATGCCAGAA CGAGATGAGA AGAGAATTGA 
    ATCAAGCGAT AGAATTACTC C

    Gene models with high sequence identity

    1. AT5G61210.1 [+] show detail - soluble N-ethylmaleimide-sensitive factor adaptor protein 33
      E-value: 3e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Target SNARE coiled-coil domain 0.0290000036269908
    HMMSmart Target SNARE coiled-coil domain 0.000000000000920000434662057
    Gene3D G3DSA:1.20.5.110 6.19998763505952e-19
    ProfileScan Target SNARE coiled-coil domain 0
    HMMPanther PTHR19305 8.30001403791594e-40
    HMMPfam Target SNARE coiled-coil domain 0.0000000000037

    See the detailed result >

    AT5G61210.1

    Model type
    Protein coding
    Short Description
    soluble N-ethylmaleimide-sensitive factor adaptor protein 33
    Curator Summary
    membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation
    Computational Description
    soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (SNAP33); FUNCTIONS IN: protein binding, SNAP receptor activity; INVOLVED IN: vesicle-mediated transport, response to other organism, cellular membrane fusion, response to mechanical stimulus, cytokinesis by cell plate formation; LOCATED IN: integral to membrane of membrane fraction, plasma membrane, chloroplast, cell plate; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNAP-25 (InterPro:IPR000928), Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (TAIR:AT1G13890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR