K23840

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23840

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23840

Determination of introduced cDNA(s)

  • J013008G03 - Rice Full-length cDNAs - Original: J013008G03

    full reading [+] show sequence

    Nucleotide sequence: J013008G03 - full reading
    GGCTCGCGCA CTACACCGGC GAGCCGCGGG CGGCGGCGGC GGCTGGGAGT 
    ACGGGAGACG CCGGAATACT AGCCTCGCAT CCTCCTCCCT CGAGTTCGCT
    GCGGGACCGC GCCATCCTCG TCGGAGCCCC GGGCCCAGGG GACACGAGCT
    TCTCCGCCCT CTTGTCCTTC GGTCAGCACC GACGCCGCCG TCTCGCTCGC
    TCGCTCGATC GAGCCGTTGC TTGTGGCCGG AGGAAAGGCC TCAACAGTCA
    ATATGGCTGG CTCATTCATT ACTGGGGCTT TAATGCTTAT TCTTGGATAT
    GCATACCCAG CCTATGATTG CTACAAGACG GTGGAACTGA ACAAGCCTGA
    GATCGAGAAG TTGCGGTTCT GGTGTCAGTA CTGGATTTTA CTTGCTGTTC
    TAACTGTTTT TGATAGAGTT GGGGATAATT TTGTATCATG GTTGCCAATG
    TACAGTGAAG CAAAGCTGGC ATTTGTCGTA TTTTTGTGGT ATCCCAAAAC
    ACTGGGGACT GCCTATGTGT ATGAATCATT CTTTAAACCG TGGATTGCAA
    AATACGAAGC TGATATCGAT CACAATCTGC TTGAGTTGAG GACTAGAGCT
    TGCGACATGG CGGTTCTTTA CTTCCAGAAG GTTTCCAACT ATGGTCAGAC
    AAGGCTTTAT GAAATCTTGC AATATGTTGC TTCACAGTCA CAAACCCAAA
    CATCTCGCCC ACAGGCACGT GAACAGCAGC AGCGCCCACC ACCAGCACAG
    ACTCGGCAAG TGAACCCTGC ACCTCAGCCT GTTCCTGCAC CTTCGGTGCC
    TCCACTGCCA CCACAACCCA CCCAAGCTCC TTCTGCTCCA CCAAGGAACC
    AAACGCAGGA TACAACTCCA GTTCCTGTTC CTCCTCCTGG TGCAGAGTCT
    CTTGCCCAGC CACAGGCACA TGCTGGTCCT CCTCAAGCTA ACGCCAGCGA
    CGGCCCTCAG AACACTGAAG CTATGCAGAT TGATCCATCT GGTCCATCAA
    CAAGCAACGC ACGTCAGTCA TCAATACCAG ACGAAGATAC GCTCATCCAG
    GAGGCTATTC GGATGACGAG GGGCCGGCTT AGGAGGCGCA CGGCCGGGTC
    TGGACCTCCA CCAAGTTAGA ACCTACACCA AGGGTGATCT CGACACACCA
    TTCGCTCTAT GCTGGGATGA TTCTGCACCT TCGGGCGTTC AACTGATAAC
    AGAAGGAAAT GCTGGGTTGG TGAAAAGTGA TTCAAATATT TCAAATCCTC
    CTGGAGTGAA CGCACACATT CCTCCTCTTG ATGTGATGCC TGTTGCTGTC
    GTCTCACTAC TCCCAAATGT GCATAATAGA GGCAATGATG ACACATATCA
    GTAGCTTGGC ATGTCGAATG CATCAAGATG GGTCGAACTT GTCCATGAGG
    AGTCAGGTCC GTCATATTTG AATTTTGAAA AGTTCAACAT ACCAAAGTAT
    GCGTGACTGA CTTGCCGAAA ATCATCACAA AAATCAAATG GGTAATTAGT
    ATAGTTGATC TTGATCCCTT TGTTTTTAAT T

    Gene models with high sequence identity

    1. AT5G42560.1 [+] show detail - Abscisic acid-responsive (TB2/DP1, HVA22) family protein
      E-value: 6e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TB2/DP1/HVA22 related protein 1.2e-27
    HMMPanther HVA22-LIKE PROTEIN 1.3e-98
    HMMPanther TB2/DP1/HVA22 related protein 1.3e-98

    See the detailed result >

    AT5G42560.1

    Model type
    Protein coding
    Short Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein
    Computational Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR