K23840

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23840

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23840

Determination of introduced cDNA(s)

  • J013008G03 - Rice Full-length cDNAs - Original: J013008G03

    full reading [+] show sequence

    Nucleotide sequence: J013008G03 - full reading 
    GGCTCGCGCA CTACACCGGC GAGCCGCGGG CGGCGGCGGC GGCTGGGAGT 
    ACGGGAGACG CCGGAATACT AGCCTCGCAT CCTCCTCCCT CGAGTTCGCT 
    GCGGGACCGC GCCATCCTCG TCGGAGCCCC GGGCCCAGGG GACACGAGCT 
    TCTCCGCCCT CTTGTCCTTC GGTCAGCACC GACGCCGCCG TCTCGCTCGC 
    TCGCTCGATC GAGCCGTTGC TTGTGGCCGG AGGAAAGGCC TCAACAGTCA 
    ATATGGCTGG CTCATTCATT ACTGGGGCTT TAATGCTTAT TCTTGGATAT 
    GCATACCCAG CCTATGATTG CTACAAGACG GTGGAACTGA ACAAGCCTGA 
    GATCGAGAAG TTGCGGTTCT GGTGTCAGTA CTGGATTTTA CTTGCTGTTC 
    TAACTGTTTT TGATAGAGTT GGGGATAATT TTGTATCATG GTTGCCAATG 
    TACAGTGAAG CAAAGCTGGC ATTTGTCGTA TTTTTGTGGT ATCCCAAAAC 
    ACTGGGGACT GCCTATGTGT ATGAATCATT CTTTAAACCG TGGATTGCAA 
    AATACGAAGC TGATATCGAT CACAATCTGC TTGAGTTGAG GACTAGAGCT 
    TGCGACATGG CGGTTCTTTA CTTCCAGAAG GTTTCCAACT ATGGTCAGAC 
    AAGGCTTTAT GAAATCTTGC AATATGTTGC TTCACAGTCA CAAACCCAAA 
    CATCTCGCCC ACAGGCACGT GAACAGCAGC AGCGCCCACC ACCAGCACAG 
    ACTCGGCAAG TGAACCCTGC ACCTCAGCCT GTTCCTGCAC CTTCGGTGCC 
    TCCACTGCCA CCACAACCCA CCCAAGCTCC TTCTGCTCCA CCAAGGAACC 
    AAACGCAGGA TACAACTCCA GTTCCTGTTC CTCCTCCTGG TGCAGAGTCT 
    CTTGCCCAGC CACAGGCACA TGCTGGTCCT CCTCAAGCTA ACGCCAGCGA 
    CGGCCCTCAG AACACTGAAG CTATGCAGAT TGATCCATCT GGTCCATCAA 
    CAAGCAACGC ACGTCAGTCA TCAATACCAG ACGAAGATAC GCTCATCCAG 
    GAGGCTATTC GGATGACGAG GGGCCGGCTT AGGAGGCGCA CGGCCGGGTC 
    TGGACCTCCA CCAAGTTAGA ACCTACACCA AGGGTGATCT CGACACACCA 
    TTCGCTCTAT GCTGGGATGA TTCTGCACCT TCGGGCGTTC AACTGATAAC 
    AGAAGGAAAT GCTGGGTTGG TGAAAAGTGA TTCAAATATT TCAAATCCTC 
    CTGGAGTGAA CGCACACATT CCTCCTCTTG ATGTGATGCC TGTTGCTGTC 
    GTCTCACTAC TCCCAAATGT GCATAATAGA GGCAATGATG ACACATATCA 
    GTAGCTTGGC ATGTCGAATG CATCAAGATG GGTCGAACTT GTCCATGAGG 
    AGTCAGGTCC GTCATATTTG AATTTTGAAA AGTTCAACAT ACCAAAGTAT 
    GCGTGACTGA CTTGCCGAAA ATCATCACAA AAATCAAATG GGTAATTAGT 
    ATAGTTGATC TTGATCCCTT TGTTTTTAAT T

    Gene models with high sequence identity

    1. AT5G42560.1 [+] show detail - Abscisic acid-responsive (TB2/DP1, HVA22) family protein
      E-value: 6e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TB2/DP1/HVA22 related protein 1.2e-27
    HMMPanther HVA22-LIKE PROTEIN 1.3e-98
    HMMPanther TB2/DP1/HVA22 related protein 1.3e-98

    See the detailed result >

    AT5G42560.1

    Model type
    Protein coding
    Short Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein
    Computational Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR