K23849

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23849

Determination of introduced cDNA(s)

J033131D02 - Rice Full-length cDNAs - Original: J033131D02

full reading [+] show sequence

GAATCCACCC ACCTCGCCGC CCGTCGCCGT CGCCTCGTCG CCGCCACTCA 
CCTCTCACCA ACAATCGCGA CGACGAAAAG AAAAAAAAAA AAAAGAATCT 
CGTCTCACCC CCAATGGCGC AGATCATCGA CGGGAAGGCG GTCGCCGCCG 
ACATCCGCCG CGAGGTCGCC GCCGACGTCG CCGCCCTCTC CTCCGCCCAC 
AACCTCGTGC CCGGGCTGGC GGTGGTGATC GTGGGGAGCA GGAAGGACTC 
GCAGACGTAC GTGCAGATGA AGCGCAAGGC GTGCGCCGAG GTCGGCATCC 
GCTCCGTCGA CGTCGACCTC GCCGAGGACA TCTCCGAGGC GGCGCTCGTC 
GCCGAGGTCC ACCGCCTCAA CGCCGACCCA GCCGTCCATG GCATACTTGT 
CCAGCTTCCA TTGCCAAAGC ATATTAATGA GGAAAAGATA TTGAACGAGA 
TCAGCTTAGA GAAAGATGTT GATGGGTTCC ATCCTCTGAA TATTGGCAAG 
CTTGCAATGA AAGGCAGAGA CCCACTGTTC CTACCATGCA CGCCGAAGGG 
ATGCATGGAG CTCCTAACAC GGAGCGGAGT TACCATCAAT GGGAAGCGAG 
CGGTCGTGGT TGGCCGCAGC AACATTGTCG GGCTACCTGT ATCCCTGCTT 
CTTCTGAAGG CGGATGCGAC CGTATCCATT GTTCACTCCC GGACCCCAAA 
CCCTGAAAGT ATTGTCCGTG AAGCAGACAT TGTCATTGCA GCGGCTGGCC 
AGGCTATGAT GATCAAAGGA GACTGGATCA AACCAGGCGC TGCTGTCATC 
GACGTTGGGA CGAACTCCAT CAGTGACCCA ACCAGGAAAT CGGGGTACAG 
ACTCGTCGGC GATGTGGATT TCGCAGAGGT GAGCAAGGTT GCTGGTCACC 
TGACTCCAGT CCCAGGTGGC GTTGGCCCCA TGACGGTGGC GATGTTGCTG 
AAGAACACGG TGGATGGAGC GAAACGTGGT ATAGTTCAGT AAAGTTTCCA 
TCTTGTATGC TGTAACTGCA AGGATGATGT TGTAATTGAG TGCATTTCTG 
GACAAATTCG TTCTCATTTT TGTTGTGTGA CGGTTATTTC GAGAATAATA 
AGAATAAGTT TGTCTGTC

Gene models with high sequence identity

AT3G12290.1 [+] show detail - Amino acid dehydrogenase family protein
E-value: 1e-128; Score: 456.00

InterPro Scan Digest

Program	Description	E-value
HAMAP	Tetrahydrofolate dehydrogenase/cyclohydrolase	37.357
HMMPanther	METHYLENETETRAHYDROFOLATE DEHYDROGENASE FAMIL	8.1e-179
FPrintScan	Tetrahydrofolate dehydrogenase/cyclohydrolase	1.6e-81
FPrintScan	Tetrahydrofolate dehydrogenase/cyclohydrolase	1.6e-81
FPrintScan	Tetrahydrofolate dehydrogenase/cyclohydrolase	1.6e-81
FPrintScan	Tetrahydrofolate dehydrogenase/cyclohydrolase	1.6e-81
FPrintScan	Tetrahydrofolate dehydrogenase/cyclohydrolase	1.6e-81
FPrintScan	Tetrahydrofolate dehydrogenase/cyclohydrolase	1.6e-81
FPrintScan	Tetrahydrofolate dehydrogenase/cyclohydrolase	1.6e-81
superfamily	NAD(P)-binding domain	2.3e-54
superfamily	Aminoacid dehydrogenase-like, N-terminal doma	1e-43
Gene3D	no description	9.2e-43
Gene3D	NAD(P)-binding domain	5.8e-51
HMMPfam	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	6.9e-68
HMMPfam	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	2.3e-42
PatternScan	Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site	0

See the detailed result >

AT3G12290.1

Model type: Protein coding
Short Description: Amino acid dehydrogenase family protein
Computational Description: Amino acid dehydrogenase family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (InterPro:IPR020631), Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding domain (InterPro:IPR016040), Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (InterPro:IPR020867), Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (InterPro:IPR020630); BEST Arabidopsis thaliana protein match is: Amino acid dehydrogenase family protein (TAIR:AT4G00620.1); Has 9969 Blast hits to 9964 proteins in 2781 species: Archae - 105; Bacteria - 5648; Metazoa - 394; Fungi - 308; Plants - 157; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink).
Link: InterPro Scan - TAIR