K23903

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23903

Determination of introduced cDNA(s)

  • J023041E24 - Rice Full-length cDNAs - Original: J023041E24

    full reading [+] show sequence

    Nucleotide sequence: J023041E24 - full reading 
    GCTCTTGCCG ACGACTCGGA AAAAAACCGC GGACACCGCG TCCGCTCGAC 
    GGAGGGAAGG GGATGAGCTC CTCGTCGGCG TCGGCTGTGC CGCCGGAGGA 
    CGACGTCTGC TCGGTCTGCC ACGACCGCTT CCGGATCCCC TGCCAGGCCA 
    ACTGCTCCCA TTGGTTCTGC GGAGAGTGCA TTATCCGTGT TTGGAATCAT 
    GGACCTTCTG TACAGCCTTG CAAGTGTCCC ATTTGCCGTC GCCTTATTAA 
    TCTTCTGGTA CCAGCAAATG TATCAATAGA TAATGATGAT GATCCGCAAA 
    TTCAGCATGT TCTAGGAGAG GTTCAGCATT ACAACCGCAT ATTTGGTGGA 
    ACACCCCGCA ACCTGACTCA GAGGTTGCAA GACCTACCCT TTTTCATCAG 
    AAGACTGTTC AGGGAACTAC TGGATCCCCA GAGGACCCTC CCACTTGTCT 
    TCAGGGCGAG GATGGTCATG ATGGTAGCCC TGAGTGCAAT TTATGTCCTG 
    AGCCCCATCG ACATTCTTCC TGAAAACGTG CTGGGGCTGT TTGGATTCTT 
    CGATGACTTC CTCGTGCTGC TGATCGTGTT CCTCCACCTT GCTGCTGTCT 
    ACCGTTCTCT GCTGCTCTAC CGCCACGGAG GCCACTGAAT TGCTGCTGCA 
    CATTACGTGA TGGCAGATGG AGTACTTGCG TCCCTGGCTG ACGTTCTGAG 
    ACAAGAGATA TTTCATTTGT GCTGGAAGAG ATTGCTAGCT AAAGTCGATG 
    ATGATTGATG GTACGAATGA TGGCGGCAGT AGTTTCTCTC CCCCTGTGTA 
    TTCTATTTCG CTATGCTATG CCTTGTTTGG TGATATTCAC ATGGTGGATT 
    TAATGAGACC

    Gene models with high sequence identity

    1. AT1G72175.1 [+] show detail - RING/U-box protein with domain of unknown function (DUF 1232)
      E-value: 7e-57; Score: 217.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMPfam Protein of unknown function DUF1232 0.0000000022
    HMMSmart Zinc finger, RING-type 0.0012
    Gene3D no description 0.00000029
    superfamily RING/U-box 0.00000000000016
    ProfileScan Zinc finger, RING-type 11.176
    HMMPanther UNCHARACTERIZED 3.6e-66

    See the detailed result >

    AT1G72175.1

    Model type
    Protein coding
    Short Description
    RING/U-box protein with domain of unknown function (DUF 1232)
    Computational Description
    FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G22510.1); Has 671 Blast hits to 671 proteins in 108 species: Archae - 0; Bacteria - 8; Metazoa - 504; Fungi - 36; Plants - 67; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR