K23906

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23906

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23906

Determination of introduced cDNA(s)

  • J023077D13 - Rice Full-length cDNAs - Original: J023077D13

    full reading [+] show sequence

    Nucleotide sequence: J023077D13 - full reading 
    GATCGGTCCG TTGGCCACGC GATTTCTCAG GCGCACCTCC GCCGCAACGC 
    GAGTCCCCCC ACCGCCGCCG GCCGCGGCGC GCCGCCGTTC TGACGCTCCA 
    CGGCCACATG AACTGCCGCC ACCTCGCCCT CCGGCTCCGC CACCTCCGCC 
    GCCTTCTCGC GGTCGCACCC CTTTCCTCGC TCGCGGCCGC GCACTCCGCT 
    AACCGCTCCT CCCCACGGCT AAACCCCACT TCGGTGCCGC CACCGCCGCG 
    GCAGCTGCAT CTCCCGACCC TCCAGGCTCG ACGGCTCTGC TCCACCACGC 
    ACGTCGTCCT CCCCACAAAC CTCCAGGACG AGCGGTTCGC GGCTCTCTCG 
    GATAGGATCT ACGACGCCGT GATTGAGACC GCGGCGGGTT CCAGCGAGGG 
    CACGGAGGCG GCCCTTGACG CGCTGGGCGC CGAGCTGACC ACCCCGCTCG 
    TCGCCGACGT GCTGCATCGC CTCCGTTACG ACGAGAAGCT GGCCTTCCGG 
    TTCTTCGTCT GGGCGTCTCA CCAGGACGGC TACGAGCACG AGGCCGCGAC 
    GTACAACGAC GTCATCGACA TCCTCTCCGG CACGCGGTAC AAGGCCCGCC 
    AGTTCGGCGT CCTCTGCGAC GTGCTCGACC ACATGAAGCG CCGCCGCACA 
    AGGTCCGTGC CGGTCGACGA CTTGCTGGGT ATCCTGCGCG CATACACGGA 
    GAAGCACCTC ACGCATCTCA GGAAGCTGGC TAAGAAGCGG CGGGTGCGGA 
    TGCGCACGCC GCCGGAGACC GACGCTCTGA ACGTGCTGCT GGACGCCTTC 
    TGCAAGTGCG GGATGGTCCG GGAGGCGGAG GTGGTGTTCA GCCGCGTGAA 
    GAGGAAGCTG CTGGGGAATG CCGAGACATA CAGTATCCTG TTCTTCGGGT 
    GGTGCCGGGC AAGGGACCCC AAGAGGGCCA TGAAGGTGCT CGAGGAAATG 
    ATTCAGATGA AGCACACCCC TGAGAACTTC ACTTACAATG CTGCCATTGA 
    CTCATTTTGC AGTGCTGGTT TGGTCTCAGA GGCAAGGGAT TTGTTTGAGT 
    TCATGAGAAC AGAGGGGTCT ACAATTTCAT CGCCCACGGC TAAGACATAC 
    TCGATTATGA TTGCGGCGCT AGCAAAGGCT GGTCAGATGG AGGAGTGCTT 
    TGAACTGATT TCAGAAATGA GAAAGTGCGG CTGTATGCCT GATGTGTCGA 
    CATATAAAGA CTTGATTGAA GGCATGTTGT TGGTGGATAA ACTGGATGCT 
    GCTTATTGTG TTTTAGATGA GATGGCAAAG GCTGGCTTTC CCCCTGACAT 
    TGTCACTTAC AATTGCTTTC TGAAGGTGCT TTGTGGTCTT CAAAAGGCTG 
    ATGACGCGCT TGAACTCTGT GAAAGGATGA TAGAGGCGCA TTGTGAGCCT 
    AGTGTTCATA CATATAATAT GCTAATGGTG ATGTTCTTTG AGATGAGAGA 
    GCCAGATAGG GCAATCAATA TTTGGATCGA GATGGACAAG AGAGGATGCC 
    ATCGCGCTGT TGATACCTAC GAAACAATGA TTGATGGGCT GTTTGATTCT 
    GGAAGAACGG AAGATGCGAC CGCTCTTCTA GATGAGGTAA TAAACCGTGG 
    CATGAAACTT TCGTACAAGA AGTTTGATGC TATCATGTTG CGGCTATCAG 
    CTGTAGGCAA CCTTGGCGCG ATACATCGGT TGTCAGAGCA TATGAGGAGA 
    TTTTACAATG TTGCAATGTC TAGGCGTTTT GCAATCACAC AGAAGAAGAA 
    GAGCATAGGT CTGAGAAGGA AATGAATATT TCGAGATTTC TTGTTAGTGC 
    AGATGATCAG GAGTTTATAT GAGGTTAGCT AATTATTGGT TTATTATTGC 
    AGCAATTGGT TGTCACTTGC AAATGTATTA AAATATTTCC TGGGTCCTAT 
    ATAGGTTCAG TGTTATTTTA CCAATTTGTC TAGGAGTAAG TTGCATCTGT 
    GAAATGCTTT GACTGCTGGT TGCATACTTG AATAGAAACT TGCATGTAGC 
    TAATAGCAAC ACAACATCAC TCTTATGTAC CTTCAACATA GAAAAGCACA 
    ATTAGTTACA TTTTTGGTAG CTCCAACACT TTGCAGTGTG TTTGTTTCGT 
    GCAATCAGCA TAATAATGGC TAAATTGGCG AAGCAAACAA AAATATTTCA 
    ATCAATTGTT CTTATCTTAC CTGCATTTCC TGGTAGCATT TGTTTGGCAA 
    GTGGCAACCC TCACATGTAG ACCTTATGAT TTCCTTAGTT CTGCAGGAAG 
    GATATGATCC CAGTTTCACC

    Gene models with high sequence identity

    1. AT1G73400.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 1e-162; Score: 570.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.0001
    HMMPfam Pentatricopeptide repeat 7.3e-05
    HMMPfam Pentatricopeptide repeat 8.7e-07
    HMMPfam Pentatricopeptide repeat 5.2e-09
    HMMPfam Pentatricopeptide repeat 0.0066
    HMMPfam Pentatricopeptide repeat 0.0082
    HMMPfam Pentatricopeptide repeat 0.0019
    ProfileScan Pentatricopeptide repeat 8.944
    ProfileScan Pentatricopeptide repeat 10.939
    ProfileScan Pentatricopeptide repeat 10.578
    ProfileScan Pentatricopeptide repeat 12.386
    ProfileScan Pentatricopeptide repeat 9.832
    ProfileScan Pentatricopeptide repeat 11.016
    ProfileScan Pentatricopeptide repeat 9.514
    ProfileScan Pentatricopeptide repeat 9.799
    superfamily TPR-like 1.7e-24
    HMMTigr Pentatricopeptide repeat 0.037
    HMMTigr Pentatricopeptide repeat 3.3e-05
    HMMTigr Pentatricopeptide repeat 6.8e-07
    HMMTigr Pentatricopeptide repeat 2.4e-10
    HMMTigr Pentatricopeptide repeat 0.00012
    HMMTigr Pentatricopeptide repeat 1.6e-07
    HMMTigr Pentatricopeptide repeat 0.0003
    HMMTigr Pentatricopeptide repeat 6.5e-05
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.4e-90

    See the detailed result >

    AT1G73400.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62470.1); Has 32572 Blast hits to 10552 proteins in 258 species: Archae - 4; Bacteria - 9; Metazoa - 159; Fungi - 256; Plants - 31316; Viruses - 0; Other Eukaryotes - 828 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR