K23925

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23925

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23925

Determination of introduced cDNA(s)

  • J013024C10 - Rice Full-length cDNAs - Original: J013024C10

    full reading [+] show sequence

    Nucleotide sequence: J013024C10 - full reading 
    GATCCGCAAC CGCATCGCCC ATTCCATTTC CATGGCGCTC GCCGCCGCCG 
    CCACCACCTT CCGCCCTCGC CTCGTCGTCA CCGCCAAAGC CGACAACACC 
    GACACTCGCC GTCGCCACTG GAAGGCCGGT GAGTTCCCCT TCCCCACCTC 
    TTCCGACACT CCCCGCCGGA GCGCCCGCAC CGCCGAGCGT CCGCCCGATA 
    AGCCGAGGGA TGAAGATGGG GATAGCAGCA GGAGGACTGG GCGCAGGCAC 
    TGGAAGGCAG GCGAATTCCC GGGCACGCAG GAGGACTCCA GGCGACCTCG 
    GAGGAGCCCC ATCAAGAACG TCAAGAAGCG GCTTGACGCG CGCGCCGAGG 
    CCAAGGCGTG GGCCTGCACC GTCACCGAGG CCCTCGCTGA TCGCATCGAC 
    GCCAAAAACT GGCAAGAGGC GCTCCAGGTC TTCCAGATGC TCAAGGAGCA 
    ACCTTTCTAT CATCCCAAAG AGGGCACTTT CATGAAGCTC CTCCTGCTGC 
    TGGGCAGGTC AGGCCAGCCT TCCCGTGCTC GCTACCTCTT CGATGAGATG 
    CTGCAGCAAG GATGCCAGCC CACCCCGGAG CTCTACACGG CCTTGATTGC 
    TGCCTACTGC AGGAATGGCC TCCTCGACGA CGCCTTCCGC CTTCTTGCCG 
    ATATGAAGGC CTCTCCGGTT TGCCAGCCTG ACGTCTATAC CTACAGCACC 
    ATCATCAAGG CTTGTGTTGA TGCCTCAAGA TTTGACATAG TCGATGCTAT 
    GTACAAAGAT ATGGCTGACC GCTCCATAGC GCCCAACACG GTCACGCAGA 
    ACATTGTCCT CAGTGGCTAT GGCAGGGCTG GAAGGTTGGA TGACATGGAG 
    AAAGTACTCT CTGCAATGCT CGACAGCACA ACTAGCAAAC CAGATGTATG 
    GACTATGAAC ATTATATTAA GCCTATTTGG TAACAGGGGT CAGATTGAAT 
    CTATGGAGAA GTGGTATGAG AAATTCCGAG GCTATGGGAT CGAACCGGAG 
    ACTCGGACAC TCAACATTCT CATTGGCGCA TATGGGAAGA AGCGGATGTA 
    TGACAAGATG TCTGCAGTGA TGGAGTACAT GCGCAAGTTA GCGTTTCCAT 
    GGACCACTGC GACATTCAAC AATGTGATTG AGGCATTCGC TGACGCAGGC 
    GATGCAAAAA ACATGGAGCA CACATTTAAC CAGATGCGTG CAGAGGGGAT 
    GAAGCCAGAT ACAAAGACAT TTTGTTGTCT CATAAATGGG TTTGGCAATG 
    CGGGTCTTTT CCATAAGGTG GTTGGCATGG TTAAGCTGGC TGAGAGGCTT 
    GGTGTGCCAA TGGATACAAC TTTCCACAAT GCTGTTCTCA TGACATGTGT 
    AAAAGCTGAG GATTTGATGG AGATGGAGAG GGTCTTCATG CGCATGAAGC 
    AAATACAGTG TATCCCAGAT GCTACAACAT ACTCCATTTT GGTGGGAGCT 
    TATCGGAAGG AAGGAATGAC TGACAAGATC TATGTTCTGC AACAGGAGAA 
    CCCGACTTTG GTTCCAACTG ACCTTGTCCA TGTGTAACTC TCACCACTGA 
    TCTGTACCTC AAAGACTATA CATTGGATGA GCTGCAGTTC AATGGGATCG 
    ACACTGCTGC TTTTCTGACT CCTGTGGATC TGAATTTCAG TGTCAGACGC 
    CCACCCAAAC AGCATCTGAA TTTGGGTGTC AGACGCCCAA ACGGCCAGAC 
    CCTAACAACA GCTGCTAGAA AGATCATCAG CAGATGTATC AACACGGGGA 
    ATCTCGCCTA ATTTCTACCC TGGCACCTCA AGCTGCATAT CAATGGCCTT 
    TGATGATAAC TTTCAAGGAC AGGAATGTAG TTGAGTTTTT TGTGTTCAGG 
    TATGATCACC CTCGAAAAAA AGGTGTCATA AATGGTTATG AGATAGTAGA 
    GATTTATGCT CCCATGAGAC TCTGTAAATC TCTCATAAGG ATGCCAATTT 
    TCTGTAAGTG AAAACAAGCT AAAGTGCATG GAGAGTACTC ACTCCGTACT 
    CGTAAAGGAA GTCGTTTTGG ACAGCGACAC GGTCTCCAAA ACACAACTTT 
    GACTTCTTGT TTCTATAAAA ATATTTATTG AAAAGTGATA TATGTATACT 
    TTTATGAAAG TATTTTTCAA GACAAATCTA TTCATATAAC TTTTACATTT 
    TCAAACTCAA CAACTTGAGA GTTATTCATG ACCCAAGGTT TGATTTAAAC 
    ATTGTCCTAA ACGACTTACT TTACGAGTAC AGAGGGAGTA TCTTTGAAAG 
    GAATATGAGC ACAGAGCACT GGGTAGGCGT TTGCAACAAA TCTTACATTT 
    ATTTCTATCT ACTGTTAAAG AATGCTAATT AATCT

    Gene models with high sequence identity

    1. AT3G06430.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 6e-174; Score: 608.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.03
    HMMPfam Pentatricopeptide repeat 3.9e-07
    HMMPfam Pentatricopeptide repeat 0.064
    HMMPfam Pentatricopeptide repeat 0.0025
    HMMPfam Pentatricopeptide repeat 0.43
    HMMPfam Pentatricopeptide repeat 0.0047
    HMMPfam Pentatricopeptide repeat 0.013
    HMMPfam Pentatricopeptide repeat 0.088
    HMMPfam Pentatricopeptide repeat 0.36
    superfamily TPR-like 6.5e-21
    HMMTigr Pentatricopeptide repeat 9.9e-05
    HMMTigr Pentatricopeptide repeat 9.6e-08
    HMMTigr Pentatricopeptide repeat 4.3e-06
    HMMTigr Pentatricopeptide repeat 9.4e-05
    HMMTigr Pentatricopeptide repeat 0.0049
    HMMTigr Pentatricopeptide repeat 0.0032
    HMMTigr Pentatricopeptide repeat 2.7e-06
    HMMTigr Pentatricopeptide repeat 9.6e-05
    HMMTigr Pentatricopeptide repeat 0.14
    ProfileScan Pentatricopeptide repeat 9.942
    ProfileScan Pentatricopeptide repeat 10.435
    ProfileScan Pentatricopeptide repeat 10.391
    ProfileScan Pentatricopeptide repeat 9.35
    ProfileScan Pentatricopeptide repeat 9.35
    ProfileScan Pentatricopeptide repeat 7.892
    ProfileScan Pentatricopeptide repeat 10.446
    ProfileScan Pentatricopeptide repeat 8.111
    ProfileScan Pentatricopeptide repeat 8.484
    ProfileScan Pentatricopeptide repeat 5.908
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3.3e-99

    See the detailed result >

    AT3G06430.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR