K23944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23944

Determination of introduced cDNA(s)

J023100E07 - Rice Full-length cDNAs - Original: J023100E07

full reading [+] show sequence

GTGGTTGAGC ACACACCTCA CCTCACCTCC TCCCCCGATC CCCCTCGCCT 
CCTTCCCCTT TCCCCCCTCA CCTCTCTGCT CTTCTCCGCC GCACCAATCC 
GCCCCCTCGC GATTCGACCA GATCGGCGCG AGGGCATATC ATGGCATCGA 
AGCGGATCCT CAAGGAACTA AAGGACCTGC AGAAAGATCC TCCAACATCA 
TGCAGTGCAG GTCCTGCTGG TGAGGATATG TTCCATTGGC AGGCCGTGTC 
GCCGAGCAGG TAGAACAGCA CGGCGAGCCA CGCCGCCATC ACGGCGTAGC 
CAAGAACCCG CCGCTCCTCG CCGAACACGC AGTGGAACAG GTACAGGTAG 
TCGACGTAGC CACGCGGGAA TCGCCGGCGA TCAAGGCCAT CCTCCTCGCC 
GACGTGCTCG CACCTCTCCA CGTAGCTCTC AACCCGGAAC ACGCCGCCGC 
CGCCTCCGCC TCCGCCTCCC CTCGCGCCGT CGCCGTCGCC AAGAGCCGCC 
ACTTCCGCTT CCGCCTCTGC CTCGTCCAAG TCCAAGCCAA CTACCTAAAC 
CTAAACCCTA TTCTTCTTCT TTCGCCTCCG CCGCGATGTC GTCGGAGCCT 
CCACCCGATG CCGCCGCCGC CGCCGCCTCC TCCGCGGGGG ATCTCGCGGC 
CGATCTCTCC TCCGCCACCA TCAGCAAGAA GCAGCTCAAG AAGGATGCGA 
GGAAGGCGGA GAAGGCCGAG AAGGCGTCGC AGCGCCAGCA GCAGCAGCAG 
CCGCAGGCCG ACGCCGACGA CCCCTTCGCG GCCAACTACG GCGACGTCCC 
CGTCGAGGAG ATCCAGTCCA AGACCATCTC CGGCCGCGTG TGGACCGAGA 
TCGGCGGCCT CGACGAGGCC GCCGCCGGCC GCTCCGTCCT CATCCGCGGC 
GCCGCGCAGG CGATCCGGCC CGTCAGCAAG AAGATGGCCT TCGTTGTGCT 
GCGCGAGAGC ATGAGCACCG TCCAGTGCGT GCTCGTCGCC AGCGCCGACG 
CAGGGGTCAG CACCCAGATG GTGCGCTTCG CCACCTCCCT CAGCAAGGAA 
TCAATCGTCG ACGTCGAGGG CGTCGTCTCC CTCCCCAAGG AGCCCCTCAA 
GGCCACCACG CAGCAGGTGG AGATTCAGGT GAGGAAGATC TATTGCATCA 
ATAGGGCGAT CCCCACCCTT CCAATCAACC TTGAGGATGC CTCACGGAGT 
GAGGCTGAAA TTGAAAAGGC TGAACAAGCT GGAGAGAAGC TAGTTCGTGT 
GGGCCAAGAT ACTCGCTTGA ACTATAGAGC TATTGATCTC CGGACACCTG 
CAAATCAAGC AATATTCAGA ATTCAATGTC AAGTTGAGAA CAAATTCAGG 
GAATATTTTC TGTCGAAAAA TTTTGTTGGG ATTCACAGCC CAAAGCTAAT 
TGCTGGATCC AGCGAAGGTG GTGCAGCTGT ATTCAAGCTA CAGTACAATG 
GACAGCCAGC ATGTTTAGCA CAGTCTCCTC AGTTGTATAA GCAGATGGCT 
ATTTGTGGTG GGTTTGAACG TGTATTTGAG GTTGGACCTG TTTTTAGAGC 
TGAGAATTCA AACACTCACA GGCATCTGTG TGAGTTTGTT GGCCTTGATG 
CTGAGATGGA GATTAAGGAA CATTATTTTG AGGTTTGCGA CATAATAGAT 
GGTTTGTTTG TAGCAATATT TAAACACTTG AATGAAAATT GCAAGAAAGA 
ACTAGAGACA ATAAACAGGC AATATCCATT TGAACCTCTG AAGTATTTAG 
AGAAAACTTT GAAGCTCACG TATGAAGAAG GAATTCAAAT GCTGAAGGAA 
GCTGGAACAG AAATCGAACC CATGGGTGAC CTCAACACTG AAGCTGAGAA 
AAAACTAGGC CGGCTTGTTA AGGAGAAGTA TGGAACAGAA TTTTTCATCC 
TCTATCGGTA TCCTTTGGCT GTGCGTCCCT TCCACACCAT GCCTTGTTAT 
GACAACCAAG CTTACAGTAA CTCTTTTGAT GTCTTTATTC GAGGAGAGGA 
AATAATATCT GGAGCACAAA GAATACATTT ACCAGAGCTA TTGACGAAAC 
GTGCAACAGA GTGTGGAATT GATGCGAGTA CTATTTCATC ATATATCGAA 
TCGTTCAGCT ATGGTGCACC TCCTCATGGT GGTTTTGGTG TCGGCCTGGA 
GAGGGTGGTA ATGCTGTTCT GCGCCCTAAA CAACATCAGG AAGACATCAC 
TTTTCCCTCG CGATCCACAA AGGCTGGTGC CATAATTTGC TTTTTTTCCC 
AAGAGCAAGG TTTGGACTCA GTACGGACTG GGCAGTTTTC CTCGGCTGGT 
TTTTTTACCT GGACATTATT TTCGTATTTA TTAATGTGCT GTACTGCAAA 
AGCTGCTCCT TTCCACAACA TTTGGAATAG TTGCCGATAC ATTTGGAATA 
GGGCTCAACG TTGGCGTTGT GATTTCGTTG ATGATTCCGC TATTCGTAAC 
AATGGCGAAT CCAGAGCAGA AATGACCCTA TGTCAGAAAC ATATCACATA 
CTCGTATGCC TATATTTCCA AAAGATAAGG GATTATGGAA GGATGACATA 
TTCAAGTCCC AAAATACAAG GTGTGGTTTG ACTCGTGGTC TTCAACATCC

Gene models with high sequence identity

AT4G31180.2 [+] show detail - Class II aminoacyl-tRNA and biotin synthetases superfamily protein
E-value: 0; Score: 651.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ASPARTYL-TRNA SYNTHETASE	7.6e-177
HMMPanther	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	7.6e-177
HMMPanther	UBIQUITIN-CONJUGATING ENZYME E2	7.2e-14
HMMPanther	UBIQUITIN-CONJUGATING ENZYME E2	7.2e-14
FPrintScan	Aspartyl-tRNA synthetase, class IIb	3.5e-22
FPrintScan	Aspartyl-tRNA synthetase, class IIb	3.5e-22
FPrintScan	Aspartyl-tRNA synthetase, class IIb	3.5e-22
FPrintScan	Aspartyl-tRNA synthetase, class IIb	3.5e-22
superfamily	Class II aaRS and biotin synthetases	2.2e-99
superfamily	Nucleic acid-binding, OB-fold-like	1.5e-32
superfamily	Ubiquitin-conjugating enzyme/RWD-like	1.1e-08
Coil	coiled-coil	0
ProfileScan	Aminoacyl-tRNA synthetase, class II, conserved domain	18.99
Gene3D	Nucleic acid-binding, OB-fold	2e-34
Gene3D	no description	1.1e-96
Gene3D	Ubiquitin-conjugating enzyme/RWD-like	0.0007
HMMTigr	Aspartyl-tRNA synthetase, class IIb, archea/euk type	1.3e-176
HMMPfam	Aminoacyl-tRNA synthetase, class II (D/K/N)	4.7e-77
HMMPfam	Nucleic acid binding, OB-fold, tRNA/helicase-type	2.5e-06

See the detailed result >

AT4G31180.2

Model type: Protein coding
Short Description: Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Computational Description: Class II aminoacyl-tRNA and biotin synthetases superfamily protein; FUNCTIONS IN: aminoacyl-tRNA ligase activity, aspartate-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT4G26870.1); Has 27000 Blast hits to 21362 proteins in 2984 species: Archae - 448; Bacteria - 18821; Metazoa - 751; Fungi - 935; Plants - 402; Viruses - 0; Other Eukaryotes - 5643 (source: NCBI BLink).
Link: InterPro Scan - TAIR