K23946

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23946

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23946

Determination of introduced cDNA(s)

J013148H06 - Rice Full-length cDNAs - Original: J013148H06

full reading [+] show sequence

GTGCAATCCT CTCTTGCTAG CCATCTCTTG CAACCGGCAC TTCCCCCCTG 
CGAGTCCACG AGATCTGCTA TCGCATCATC AGAGCAGACT AACTAGCAGC 
CACACTGAGA AAGAGTGCAC AAGATGTCTG AAGCGATAGC CCTTGCGATG 
TCAAAGATTG AAACCTGTGT AGAGACTGGA GCTTCATTCA ACAACGCAAT 
GTCCAAGCTA TCTAAAAAGG ATAAGGTTGT GAAGGAATTG CTGGAAAAGA 
TCAAACAAAT ACAGGAGCAA TTGGATATCA CCAATGATTT CATCCAAAAT 
CACATAGGCA CAGCCAACCT TGGTGACCCA TTAGATGAGA GTTGGATTGC 
CACAGTGAGG AGGCTGGCCT TCATTGTTGA GGATGTAATG GAGAAGTACT 
TGTATTATGC TCATCAACTG CGGGAAGAGG GGTCACAGAA GCACCCTGTC 
AAAAGGTCAA GCTATGTCGA TGTTTTCAAA AAAGTTGGTC AGTTGATGGA 
CAAGATAAAT AATCGCATTG GGCACCTTTT AAGCATCAGA GAGCAGAGTA 
AGCTTGCACC GCAGCTTGTT CCTCACTCAC CATACCCCGA TTCAGAGGGC 
CAACCGGAGC TCATTGGTAC CAATGGCCCA ATTAATGTAC TACTGAAATT 
TCTGAAGCAT GGTGAGGACG GAGCTGTGCT GCAACTCAAG GTTCTATCTA 
TGCTTGGAAT TGGTGGAATT GGTAAAACCG CACTTGCATC CAAGGTGTAT 
CGAATGCTTC GAGAAGAATT TCAGAGCCAT GCTTTTGTGA CAGTGTCCAA 
GATGCCTGAT ATGACAAGGG TCTTATTTGA TATATTGGAC CAAATTGGCC 
TGCGGAAGTA TCCAGCTAGT TTGAACGAGA ATCAAGTCAT TACTCAAATT 
GGACAAGACC TAAAGGATAA GAGCTATCTC ATTGTAATTG ATGATTTATG 
GGATATGCAA CATTGGAAGA CTATCAAGGA TGCCTTGCCT GATGTCAATT 
GTGGTAGCAG ATTGATAGTT ATAACTCGTC TAAACAACAT AGCCAAAACA 
TGTAGCTCTG GCCAGAATAA TTTGACGTAT AAGGTCATGC CTCTTGCTCA 
CCATGACTCC AGAACATTGT TTCTCAAGGA AATTTTGGGC CATGAGGGCA 
GTTGCTTGGA TGCACCAGTT TTTGATGAAA TTTTGAAAAT GTTTGGTGGT 
ATGCCTTCAG CACTAAAATG TATTGGCTCA TTTCTGCGCA ACAAATCAGT 
CACAACTGAG TCTCAGAAGA TCAATATGAG TTCTTTGTAT TCTGAACTTG 
AGAATTTTCC TAGCTGGAAG AAATTGAAAA TTGCTCTTTT CCTCAGTTGC 
TGTGGTCCTT CCCAAACTCT GGAGGCTTGC TCGTTGTACT TAAGTACATT 
ACCAGACAAT CATAAGATCG AGAGAGATAT TTTGACTAGG AAATGGATTT 
CTGAAGGAAT TATCCTTAAA GATGATGAGC TTAGTATTAA CGGAGTGGTG 
AATAATTGCT TTGAGGAACT AATCAATAGG AATGTGATTC AGCAAGTGGA 
CAATAGTTTT GGGGAGTAAA CCTATGAAAT CCAATTTCTG ATGCACCACA 
TTCTTAGGCA GATAGCACGA GAAAGGAATT TTGCTACCTT CCTATCGGAA 
AATATTTTGA TATCATGCAA GGAGCCTATC CATCGCCTCT CATTTCACTG 
TTCTAAGTTA AGAATTTCGA TTGATAAAGG TGATATTCAG ATTATTTCGG 
ATTCAGGAGA TTCAAATCAA AAACCTAAGA GTCTATCGCT TGCTCGCTCC 
ATAACTCTAT GTGGTTATGC AAAGCCAGTT TCTTTTAAGC TTTTGGAGCA 
CCTGCACGTG TTAGATCTGG AAGGTTGCTG GAATGTGGAC AACTCTACTT 
TGGATGATAT ATGCCGCATG ATCCTGCTGC AGTACTTAAG TCTCAAGAAA 
ACACGAATAA CTGTGCTACC TCCACAGATT GAGAATCTAA GATGTCTCAA 
GACACTGGCT GTAACCCAAA CTGGAATCGC AGAACTCCCA CTGCAAATTG 
GGAAGTTGCC TGATTTGGAG ACTCTGGATG TAAGGCATAC ACAGGTCAAA 
GAGATACCGA AGGAACTTGT TCAACTTCCT AAATTGGTGT GTTTGCTTTT 
TGGTCAAAGT GGTTTTCACG GTGGAGTTAA GTTCCCTGTG GGAGGTAATC 
CTTCAAAGTC ACTAAAGGTG CTGGGTTCCA TCGATTCAAC ACAATGCTCA 
GCAAGTTTCA TGGGGGAGCT TAGTAGTTTG ACAGGGCTGA CGAAGCTTTC 
AGTAGTGTGC TATGACGGGA CCAAGGACAT GGAGTGGAAT CTTCGTATGA 
TGAATTCTAT GTTCAAATTT AGCAATCTTG TATCCCTGAC AATTTATGGT 
GATTTCATTT TGGGCAACGA AGTTCCTGCA CTCCAGAATC CTCCTAAACT 
TCAGAAGTTG AAGTTGGCCG GAAGATGTTT GAGTGTTCCT GGTTGGATTG 
ATAAATTCAG CGATGTTACC CTTCTAGATA TCAGGGTTTG CAGCCTAGAA 
GAGAGTGATA TGGAGATACT TTGCAAGATG AGCTCCCTGC AGAGACTTGT 
GTTAACACAG GTTCACATGC CAATAAAACA ACTAGAAATC ACAAAGGAAG 
CAAGTTTCAG CAAACTAAAT GGTTTCACAT TTGATTGCCG TGTGCCTTGG 
GTAACCTTTA AAGAAGAAGC TATGCCAAGT CTGCAATACC TCGAACTGAA 
GCTTTATGCT GGCCCAGCGG GTAAAATTCC TTCAGGTATT ACATGCCTAC 
CATGTCTCAC AAAGGTTATC CTCCGGTACT TGGTACATTA CCAAAGCAGT 
GCTAGTGTAC AGGATACAAT TTCTAAAATG AGAAAAGAAA GCAGTGAGCA 
TCCCAATATG ATCGTGCTTT CTCAAAATGG TGAGCATGAG ATTTTCCCAC 
AAAATGCTGT TTCTCGAAAT GGCGAACTCG AGATTGTCCC GGTCAATGCT 
GTTGATGGCA TGCATCAGGA TTAGCACAGG CAAAAATTGA AGAACAATAT 
TGTCATTGTT AACGCCCTAT CTGACTGCAT TCTACTGCCG TTGTTCTCTG 
GTGGGTTATA AGGACTGGTA TATTAACTTG CATCGTACAA ACGGCAAATT 
AATCCTCATT CTCGTGCCAG ACATAGTTGT GGAGCAGACG GGCAAATCAG 
ATCCTATTGG AATTACAATC CTTCTATGAC TCAAGCCAAC CAAATCAATC 
AAGATAGAAG CCAAATTAAG TTGAAAAATA TTTGCTAGGG ATTGCAATTC 
GCAGCAGTGA GGAGCGCAAG TAACAATCAG GTAGTACTTT GATAATTTGG 
TTTCTCTAAA GTTCCGCATG TATTAGTATG TATTGAATTG GAATTAATGT 
GTCCCTGTTC ACATTGATAT CTAATATATC ACGATTTCCC

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 5e-42; Score: 170.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Gene3D	no description	0.0000000000045
superfamily	P-loop containing nucleoside triphosphate hyd	0.0000000000000014
superfamily	L domain-like	1.5e-31
HMMPanther	LEUCINE-RICH REPEAT CONTAINING PROTEIN	0.000000000046
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	0.000000000046
HMMPfam	NB-ARC	3.6e-40
FPrintScan	Disease resistance protein	0.0000000000092
FPrintScan	Disease resistance protein	0.0000000000092
FPrintScan	Disease resistance protein	0.0000000000092

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR