K24007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24007

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24007

Determination of introduced cDNA(s)

  • J033090M12 - Rice Full-length cDNAs - Original: J033090M12

    full reading [+] show sequence

    Nucleotide sequence: J033090M12 - full reading
    GTGTCACACA GTGGAATTCG ACTATCCTCA GTCTGCCACG GCGCCAAACA 
    GGACTAGAGA TGGCGCTCAC TCATCACCTC CTCCGCGTTC TCTTAGCCAC
    CGCATTACCG TTGCTCTTTC TCTCCCATGC AGATGCGGGC GAGTTGGGCG
    TGTGCTACGG GAGGGACGCG GACAATCTGA TGGACCCGCA ATCCGTGGTG
    AGCCTTCTCA GGGCGAACGG CATCACGATG GTGAGGATCT TCGACGCCGA
    CCCGGCGGTG CTGAGGGCGC TGGCGAACAC CGGCATCAAG GTGATGGTGG
    CGCTACCCAA CACCGATCTG GGCTCCGCCG GCTGGGATCC GAGCTACGCA
    CAGAGGTGGG TGGAGAGCAG CGTGGTGCCC TACTACCCGG CCACGCTGAT
    CAACGGCGTG GCCGTGGGGA ACGAGGTGTT CGATCAGGCG CCTCACCTGA
    CCCAGCAGCT GGTGCCGGCC ATGAGGAACG TGCACGCGGC GCTGGCGAGG
    CTGGGCCTCG CCGATGCCAT AAGGGTGTCC ACCCCGATCA CGTTCAGCTC
    AGTCGAGGTG TCATTCCCGC CGTCCGCAGG CGCTTTCCGG GATGACATCG
    CGCAGTCGGT GATGAGCCCC ATGATCGACT TCTTGCAGCA GACTGACTCG
    TACTTTATGG TAAATCACTA CCCATTCTTT GCATATGCGG ATCCTTCTAC
    CGGAATCTCC CTCGAGTACG CCACGTTCCG TCCCAATGCT GGTGTGTTCG
    ATCCGGTGAG CGGCGTCACA TATTACAGTC TCTTTGATGC CGAGCTAGAT
    GCAGTTTACT ATGCAATAAA CAAGGTTTCT GGTAGTAACG AGAGGGCCTC
    GTTAGCCCAA GCAGGAGGAC GGGTGCCCAT CAGAGTTTCA GAATCAGGCC
    ACCCCTCTGG TGGTAGAATC CGCTCAGGGG TCACAGAAGC CAATGCTGAT
    GGGGACTCGG TGGCAACTAA AGCTAACGCT CAAGTATACA ACAATGGCCT
    TGCCAAGCGA GTCTTGTTCG GGGCCTCCAA TATGGAGGAT GTTTCTGCGT
    ACATATTCGC TTTGTTCAAC GAGAACAAGA AGGGTGGGCC ATCTATAGAG
    AGCAACTTCG GCCTGTTCTA TCCGGATGGG ACGAAGGTGT ACGATGTTGA
    CTTTCATGGT GGTGGTACAT GTCCCACAAA GGAGAGCTGG TGTGTGGCAA
    ATGCAGCTAT TGGGAATGCA CGGCTACAGG GAGCACTGGA CTGGGCGTGT
    AGTAACGGCG CGGACTGCAG TGCTATCCAA CAGGGAAAAG TGTGCTATGA
    GCCAAACACC ATGGTTGCAC ATGCATCTTA TGCATTCAAT GACTACTACC
    AGCGTAATGG CAAGGCAAGT AGCGCGTGCA ACTTTGCCGG TGCTGCTTAC
    ATCGTCTACA AGCCATCACC AAGCATCTGT GACCCGAACC CGAGTTGGTG
    CGTGGCGAAC GCAGAGGTCG GGGACATGCG GTTACAGGCA GCACTAGACT
    ATGCATGCAG TAGCTGCGCA GACTGCAGTG CCATCCAGCC TGGTGGACGG
    TGCTTTGATC GTAACACCAA GGTGGCGCAT GCGACCTATG CATTCAATGA
    CTATTACCAG ACTGCCGGCA GGGCAAGTGG CTCGTGTGAC TTTGGTGGTG
    CTGCTTCCAT CGTCAACCAG GCACCGAGAA TTGGAAACTG CGTACTCCCA
    CCAAGCAAGA CTTCTTCAAT GAACATATTT TACTGAAGAC CGAAGGTAGC
    TTACCAGAAG CTCAATAATG AAAGTGGGAT TGAAGAATAG CCCCGTATTA
    CTGTGCTGAG AAAATAAGGA TGATATTGTA TTTAGATTCT GGTTAAGAAT
    TTTAAGTGTA TTCCGTTCGC TCTTGTTGAA TAAAATTCCT TTCTACACAA
    TGCAGAATAA AATGTACAAT AAACTCCATC AAACTCCTAG AGTGCAATGG
    AAAATTTGGG AATGCAAATA CACTTAGCTG CC

    Gene models with high sequence identity

    1. AT5G55180.2 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 4e-106; Score: 382.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart X8 3.3e-43
    HMMSmart X8 3.4e-41
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.5e-101
    superfamily Glycoside hydrolase, catalytic core 2.3e-93
    HMMPfam Glycoside hydrolase, family 17 8.6e-83
    HMMPfam X8 1.9e-27
    HMMPfam X8 2.3e-27

    See the detailed result >

    AT5G55180.2

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G26830.1); Has 563 Blast hits to 555 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 554; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR