K24011

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24011

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24011

Determination of introduced cDNA(s)

  • J013001L21 - Rice Full-length cDNAs - Original: J013001L21

    full reading [+] show sequence

    Nucleotide sequence: J013001L21 - full reading 
    TCGTCTCCGC CGCCAAGCAT GCCGAGGGAG CATCATGCGT CTTGTGCCAT 
    AGACGGCAAC AGCGGCGAGC AGGCCTCGAC TCGCTTGAGC TACAAGCAGG 
    CGGCAGGGGA GGAGGCAATG AGCAGCAGCT GAGGAACCTT CGAGCTGGCG 
    CTAGGTATGT GAATGGTCGC TCTACTGGGA GGAAGGTCAT GGACTTCTAT 
    AAGATGATTG ATTTGTATGG ACATGTGAGT TGTTTTGGAA ATCTGACATA 
    GTTTCAGCGG ATTTGGCCGC TGCTGACGAT AGCCACCAAC AGCTCGGGTT 
    CTCTCTGCTA TCGATGCTTC TTACTATTTG ACCAGTGCTT CTGTTTACAG 
    ATTTGTTGGT CTACATATTA GTAAATTCAG ATGAGCTGAT GAATCAGGGA 
    ATTCAGTTTC AGGTATAAAA ACGACTTGGA CTTCTATTTC ATGGAGTCAT 
    GGTTAACATC AATATTCCTT ATTCCCAAAT TTGAGGACTT CATGGGCATC 
    CTACGAGTTC CTACACCGGA TATTAACTAC ATCATTCAGA TTCCACAGAG 
    GAGCTGCATT CCTGGTTCTG CTGTAACTGA GGGTTGATCT GCCTGATGTT 
    GATGGAGCTA CTGCCTGACG TTGATGTGCT GTTCAGCTGT TGCTGTTATG 
    AAGTGGGAAG CTCTATTACC AAATGATACC TTTCTTATTG TTGCCTCCTC 
    TGATGGCGTA TTTGAGAAAG TGACTATGCA GGATGTCTGT GATCTGATGT 
    TGTACGTGAA ACTTGGTGTT AAGCAAGAAT TAGGATCCTT TGCATTAACA 
    CAACAGAATT TGGCAGATTA TGTTGTTGAT CTTTCTTTAT AGATAGGGAC 
    AACAGACAAT GTAGAAGCTG TGATTGTTCT ATTGGGATCT CAGTATAGCT 
    TTAAAGTTAC ACT

    Gene models with high sequence identity

    1. AT3G63340.2 [+] show detail - Protein phosphatase 2C family protein
      E-value: 1e-10; Score: 64.30

     

    InterPro Scan Digest

    See the detailed result >

    AT3G63340.2

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G63320.1).
    Link
    InterPro Scan - TAIR