K24014

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24014

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24014

Determination of introduced cDNA(s)

  • J013152G03 - Rice Full-length cDNAs - Original: J013152G03

    full reading [+] show sequence

    Nucleotide sequence: J013152G03 - full reading 
    GATCCAGCTG ATCGCCTGCG CGAGGTCAAA TTCCTTTCCT CCCCAACTCA 
    ACCAACAAAC CATCACTCTC CCACTGTCAC TTCGCAGCGC CAGTGTAAAT 
    ATGTAGCCGT GCTGCTGCGC AACAGTGTGT CGTGGTGACA GATTGGGTTT 
    GTGCGGATGG GCTGAAAACC TGACCGATAA TTTGGTGGTG TTTTCTTCAG 
    TAACATCTAC TACATCAACG ACCGGCTGGA CAAGCGGACG TGGACGTACA 
    TCTTCGGCGC GTGCTGCGCC ACCACGGTGT TCATCCCGTC GTTCCACAAC 
    TACCGGATCT GGTCCTTCCT GGGCCTCGGC ATGACCACCT ATACCGCTTG 
    GTACCTCGCC ATCGCCGCCC TCCTCAACGG CCAGGCCGAA GGCATCACCC 
    ACACCGGTCC AACCAAGCTG GTGCTGTACT TCACCGGCGC CACCAACATC 
    CTCTACACCT TCGGCGGCCA CGCCGTCACA GTGGAGATCA TGCACGCGAT 
    GTGGAAACCG GCCAAGTTCA AGTACATCTA CCTGCTGGCG ACGCTGTACG 
    TGTTCACGCT GACGCTGCCG TCGGCGTCGG CCATGTACTG GGCGTTCGGG 
    GACGAGCTGC TGACCCACTC CAACGCCTTC TCGCTGCTGC CCAAGACCGG 
    GTGGCGCGAC GCGGCGGTGA TACTGATGCT GATCCACCAG TTCATCACGT 
    TCGGGTTCGC GTGCACGCCG CTCTACTTCG TGTGGGAGAA GGTGATCGGC 
    ATGCACGACA CCAAGAGCAT CTGCCTCAGG GCGCTCGCGC GGCTCCCCAT 
    CGTCGTCCCC ATCTGGTTCC TCGCCATCAT CTTCCCCTTC TTCGGCCCCA 
    TCAACTCCGC CGTCGGCGCG CTCCTCGTCA GCTTCACCGT CTACATCATC 
    CCGGCACTCG CCCACATCCT CACCTACCGT ACGGCCTCCG CGCGCATGAA 
    CGCGGCGGAG AAGCCACCGT TCTTCCTGCC GAGCTGGACG GGGATGTTCG 
    TGCTCAACAT GTTCATCGTG GTGTGGGTGC TCGTGGTGGG CTTCGGGCTC 
    GGCGGCTGGG CCAGCATGGT CAACTTCATC AGGCAGATCG ACACGTTCGG 
    GCTCTTCGCC AAGTGCTACC AGTGTCCCAA GCCCGCCCCG GCGTTGGCGC 
    AGTCGCCGGT GCCATTGCCG CACCACTAGC GCGCGCCCGT TCCGCACCAC 
    CGCCGCCGCC GCGGCGGACC GTGACAACGT GCACCGCCGA GCCCGGAGCA 
    AGGAACCTCG CTCTCCTGGC CGGCACGGCT GCAAAAATTC AGTGTTGCTT 
    AGGTTTTGGT CGCCTTGTAA TATACAAAGC CTCTCCTCCT GTGCTAGGGT 
    GTCACACCAA AATGGTAGAA GAAGAAGAGG GCATGGGTCC CTACGATCTT 
    GCCCCGGGCC GTCCGCTGCC GCGTTGCTTT CCCCCGATCC TCGATGGTGT 
    CCTTGTGTTT GTTTGGCTTG CCCCTCCCTC TGGCGATATA TATGTGATGG 
    TCGTCATGGC TTATAAAGAT TTTCAGCTCA TGTCACATTT TC

    Gene models with high sequence identity

    1. AT2G38120.1 [+] show detail - Transmembrane amino acid transporter family protein
      E-value: 8e-162; Score: 567.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AUX1-LIKE AMINO ACID PERMEASE 1.1e-208
    HMMPanther AMINO ACID TRANSPORTER 1.1e-208
    HMMPfam Amino acid transporter, transmembrane 1.4e-55

    See the detailed result >

    AT2G38120.1

    Model type
    Protein coding
    Short Description
    Transmembrane amino acid transporter family protein
    Curator Summary
    Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.
    Computational Description
    AUXIN RESISTANT 1 (AUX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUXIN RESISTANT 1 (TAIR:AT5G01240.1); Has 1256 Blast hits to 1251 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 283; Plants - 825; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR