K24032

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24032

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24032

Determination of introduced cDNA(s)

  • J033130P17 - Rice Full-length cDNAs - Original: J033130P17

    full reading [+] show sequence

    Nucleotide sequence: J033130P17 - full reading 
    GAGTCCTCCC CCTGACCCCC TCCCCCTCTC GATCCCTTCC TTCCTTCCTC 
    CCCCAATCTT CCAATCCGAG AGAGGCGCCG CACGCGTCCC AGATCTATGG 
    TTCGCGCGCC CACTCCACTC CTCCCCCACC GCCGCGCCGA CTCGCCGCCG 
    CACCGGCCCT CCGCCGCGGC CGCCGAAGCC GCCTGGCCCC GGGAGTGAAC 
    CGAACCCCAG GAGGAACGCG AGGTGAACCG GGCGCCGGAG GCGGGGGCGA 
    TGATGATCAG CAGGCAGCTC GTGCTGACCT ACCTCTACCT GCTAATCTAC 
    GTCTGCCTCT CGTCGGGAGT CATCCTGTTC AACAAGTGGG TACTTTCTCC 
    AAAGTACTTC AAATTTCCCT TTCCTATTAC CCTTACAATG ATTCACATGG 
    CGTTTTCTGG AGTCGTAACG TTCTTCCTTG TCCGTGTGTT TAAGGTCGTT 
    GCACCAGTCA AGATGACATT CCAAATATAT GCCACATGTG TGATTCCAAT 
    TAGTGCCTTC TTCGCGTCAA GTCTTTGGTT TGGAAACACA GCATACTTGT 
    ATATTTCAGT CGCCTTCATT CAGATGCTCA AGGCCTTGAT GCCTGTGGCA 
    ACATTTATAA TGGCTGTTCT ATGTGGTACT GACAAATTAA GATGGGATCT 
    TTTCTTGAAC ATGGTCTTGG TCAGTGTTGG TGTCGTAGTT TCATCATATG 
    GCGAGATTCA TTTTAATATC ATAGGAACAT TATACCAAGT AACAGGCATT 
    TTTGCGGAAG CCCTCAGGCT GGTTCTGACA CAGGTCCTCC TTCAAAAGAA 
    GGGGTTAACT CTAAACCCTA TCACAAGCCT ATATTATATA GCCCCTTGCA 
    GGTATTGCAA CTATATCTGA AAAGTTTGCT TGCTTGATAT GATTTCAACC 
    AACTACCGTT GAATGAAATA ACGACTTCTC TCTTAAAGTC TTACAGAATA 
    CTTGTACGAA AAACAAAGAG AATTTTTTAG TTTGCTCTTA TAAAAAACAT 
    GTAAACTGCC ATTTTCTTGA GGTTCCATTA GTGATATTAA TGACTTGGTT 
    TTATATAATA TGTACAACCA AATGGTGCTA GTGCTACTTT ATTGTGCAAG 
    TGCTGTTGTA ATGTACACAT GTAAATAAAA ATCACTAAAA CTTATAACAC 
    AATTGGTTTT CCTATGACAT TTATGAAGAG AACACTGTTC TTCATTTGTA 
    GTAGTTTCTA ACCTCAGTTG TTTGAATGAA TAAATAAAAG AACAGATTTG 
    AAATGTATAT TCGTCGTATT AGATTGCATG TATTAGGCAA CAAGAGCATT 
    CGAGAGGTTT ATGGCATCTG TCTGTAAGGC TTATATGTGT GGTTTCTTGT 
    TGAGAAGCAG AAAGTAGTTT GTTAGGACTT AGGAACAACC ATTTGCTGCC 
    TCAACTTTTG CACTCACTGG TTTTTCTTCT GTAGCCTCTG TGATTATTAT 
    GCACTGTTTT TGTCTCCATA CAACTAAGCT TTGCATATTC TATATGTCAC 
    TAAAATGTTT GTGCCATTTT ACTCTCTGCA ATTTCTTATA TGTATTCTTC 
    TGTTTTGCAG TTTCATCTTC CTGTTTGTTC CTTGGTTTTT ACTTGAAAAG 
    CCAGAAATGG ATGTTTCTCA AATTCAGTTC AACTACTGGA TATTTTTCTT 
    TAATGCAGTT GCTGCATTTG CATTGAACAT ATCCATCTTT CTAGTTATTG 
    GAAGAACAGG AGCAGTCACC ATCCGAGTCG CAGGAGTTCT GAAGGACTGG 
    ATACTCATTG CCCTCTCAAC CATTATCTTT CCTGAATCTA TTATTACAAG 
    CCTGAATATA ATTGGATATG CTGTTGGTAA TTATCCATTC AATTTTCTCT 
    AGAAGTAGAA TCTATATCTA TAATCTTAAC CTGTGGTTTT GTGTTCCATT 
    GCATAGCATA AACATGGGGT TATGTTAACA TGTGTAACAT ACTAACATGT 
    TCTTTTGAGT TACAAAGGGA CATAAATCCG GGGCTTGTGA AATTTGCTTA 
    TACTTTTATT TCAAATATGT TGTTTGTGAT TAACCTTCTT AATTAGTATT 
    GCTTTAATGT GTAGCTCTCT CTGGCGTTGT CATGTACAAT TATTTGAAGA 
    TGAAAGATGT CAGAGCGAAC CAACTTCCAG CTGATATCGC TCCTGACAGA 
    GCTACGAAGG ATAAGAAGAT TTCAAACATA TACAAGCCTG ACAATTTCAT 
    GGATTCTAAT GATGAAACCA CTGTTGGAAG TCTGGCGTCA GAAGGTGCAG 
    GGGTTGATGA AGAAGCCCCT TTGATTCCTT CTTCACGCCT CTCCTATGTT 
    ACTCGGACAC AAACTGGCAG CTTCAATAGC AGATGACCAT CATTTTCTGA 
    AGTTTTGAGT TAGTTGAGGG AGCAAACTTT GCCCCAGATT AACCAGCTTT 
    CCTCCTGGGG AGTCTGAAAG AGGTATTAGG ATGATAAACT ATAGCCATAT 
    TAGAAGCTCT GGTGAATAGT CCTGCATTCA CCTTGGTATA TTTTGCTAGT 
    TGGAACTGAA TGTGTATTGG CCAGACACCT GGAGATGAAG TAGAGAAAAG 
    TGCAGGGATA GGGTCAAATG TTTGACCAGT ACTTGGGATC AATTTGGTAG 
    TTGCGTTAGA TATATATTGC TTATTAACCC AGCATATTGA AAATGTTTAG 
    CAGACCATAG ACGATGTAAA GCATTTTATA GATGCTAATT TGTATTGCAG 
    TTTTGTTTCC

    Gene models with high sequence identity

    1. AT3G17430.1 [+] show detail - Nucleotide-sugar transporter family protein
      E-value: 2e-82; Score: 304.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 7.3e-21
    HMMPanther SOLUTE CARRIER FAMILY 35 3.5e-16
    HMMPanther SOLUTE CARRIER FAMILY 35 5.9e-51

    See the detailed result >

    AT3G17430.1

    Model type
    Protein coding
    Short Description
    Nucleotide-sugar transporter family protein
    Computational Description
    Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G48230.1); Has 2225 Blast hits to 2218 proteins in 235 species: Archae - 0; Bacteria - 16; Metazoa - 439; Fungi - 391; Plants - 1151; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR