K24038

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24038

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24038

Determination of introduced cDNA(s)

  • J013146E24 - Rice Full-length cDNAs - Original: J013146E24

    full reading [+] show sequence

    Nucleotide sequence: J013146E24 - full reading 
    AGGCTGCTTC CTCCTGACTC CTCTCCTGCA TTCTCTCGCT TCTGACGGCG 
    GCAACTAAGC TTTTTGGGAT TCGATTCGAG GAGGAGGTGA TGGCGGAGGA 
    GGAGGTGGCG GCGGTGGTGG GGGAGCTGAG GGGGAGCTTC AGGTCCGGGA 
    GGACGAGGGC GGCGGAGTGG CGGGCGGCGC AGCTGCGGGG GATCGTGAGG 
    ATGGTGGAGG AGAGGGAGGG GGACATCTCC GACTCGCTCC ACTCCGACCT 
    CGCCAAGCCT CGCATGGAGT CCTACCTCCA CGAGATATCA TTGGCAAAGG 
    CAGCCTGCAC ATTTGCCTTG AAGGGGTTGA AGAATTGGAT GAAACCTGAG 
    AAGGTACCTG CCGCCCTCAC TACATTCCCA TCAACTGCAC AAATTGTGTC 
    AGAGCCTCTT GGTGTCGTCC TAGTCATCTC AGCTTGGAAC TACCCTTTCT 
    TGCTCTCCAT CGACCCAGTC ATAGGAGCAA TTGCTGCTGG GAATGCCGTT 
    GTGCTGAAGC CATCAGAAAT TGCACCAGCC ACCTCAGCAT TGTTCGCCAA 
    GCTGCTACCT GAATACGTTG ATAGCTCTTG CATAAAAGTG GTGGAGGGAG 
    GCGTTCCAGA AACAACCGCA CTCTTAGAAC AAAAGTGGGA TAAGATCTTC 
    TACACAGGTA GCGGAAATGT GGGCCGCATA GTGATGGCAG CAGCTGCAAA 
    GCATCTTACC CCTGTGGCTC TAGAGCTTGG TGGAAAATGC CCTGCAATTG 
    TTGATTCTAA TACTGATCTT CATGTTACCA TGAAGAGGCT AGCTGTTGGC 
    AAGTGGGGAT GTAACAACGG GCAGGCATGC ATTGCTCCAG ACTACGTTAT 
    AACAACAAAA TCATTTGCTC CAGAGCTGGT TGACTCTTTA AAAAGAGTTT 
    TGAAAAGGTT CTATGGGGAG GATCCTTTGC AATCAGAAGA CTTGTCCCGT 
    ATTGTGAATT CTAACCATTT CCGTAGATTG ACAAATTTGA TAGAGGATAA 
    GAAAGTCGCC CAAAAGATTG TATATGGTGG CCAAACAGAT GAGAAGCAAC 
    TAAAAATAGC TCCTACTGTG TTGTTAGATG TTCCTCTTGA TACAACACTC 
    ATGGCAGAGG AAATTTTTGG TCCCTTACTT CCCATTGTAA CAGTTGACAA 
    GATTGAAGAT AGCATCCAGT TCATCAACTC AAGGACCAAG CCACTTGCAG 
    CCTATCTTTT CACCAAGGAC AAGAAACTGC AAGAGGAATT TGTGTCCAAT 
    GTCCCAGCAG GAGGAATGCT TGTAAATGAT GTTGCCCTGC ATCTCGCCAA 
    TCCGCACCTG CCATTTGGCG GAGTCGGCGA CAGCGGGATC GGCTCCTACC 
    ATGGCAAATT CAGCTTCGAT TGTTTCACCC ACAAGAAGGC CGTCCTGATC 
    CGCGGCTTCG GAGGGGAGGC AACTGCTAGG TACCCACCTT ACACGATTGA 
    GAAGCAGAAG ATCCTGAGAG GACTGATAAA CGGCAGCTTC TTTGCACTGA 
    TTCTTGCCCT CCTGGGCTTC CCCAAAGAGA GGCGTTAGAA AACTTTCAGT 
    AGTTTCAGTA CAGTACTTGT GCATTTGAGT GAGTGCAGGC CATGCTGTCA 
    ATGGAAGCCA TTTCCTGCAT GTTGTTTTAC ACAGGTGTAC ATTATATTTG 
    TCGGATTTTC TTGTGTAACT TATTGAAAAT TCTACTACAC AGGGTTACAT 
    AAATAAACAT GATTTGTCAG CAAGCTCCCC GCAAAAAAAA AAAAAAAAAA 
    AAAAAAAAAA AGAAGGTAGC AGAAGCAAGC TAAGATAGAC TGCGAGAAGA 
    TTTGTACTAC AACCAACAAT AGGGATATAT ATAGAATGGA GCACTGTGAT 
    GTTAGATGTG CAAAGTAGCT TGAACTAGGG ACTCATATTA AGCTGCTTCT 
    CTCCGATGAA GCTTGCAAAC CC

    Gene models with high sequence identity

    1. AT1G44170.2 [+] show detail - aldehyde dehydrogenase 3H1
      E-value: 3e-161; Score: 565.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Aldehyde dehydrogenase, N-terminal 3.2e-66
    superfamily Aldehyde/histidinol dehydrogenase 1.1e-122
    HMMPanther Aldehyde dehydrogenase NAD(P)-dependent 3.1e-252
    HMMPanther Aldehyde dehydrogenase 3.1e-252
    HMMPfam Aldehyde dehydrogenase 3.7e-88
    HMMPIR Aldehyde dehydrogenase NAD(P)-dependent 3e-233

    See the detailed result >

    AT1G44170.2

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 3H1
    Curator Summary
    Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels.
    Computational Description
    aldehyde dehydrogenase 3H1 (ALDH3H1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum, plastid, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 3I1 (TAIR:AT4G34240.1); Has 54348 Blast hits to 54297 proteins in 2962 species: Archae - 470; Bacteria - 33236; Metazoa - 2435; Fungi - 2124; Plants - 998; Viruses - 0; Other Eukaryotes - 15085 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR