K24043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24043

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24043

Determination of introduced cDNA(s)

  • J013037C13 - Rice Full-length cDNAs - Original: J013037C13

    full reading [+] show sequence

    Nucleotide sequence: J013037C13 - full reading 
    GGTCATCATC ATCCACCCCC ACCGGAGCAG CAGCCGACGA TCTCGCCGCC 
    GCCAACGCCA ACGCCAAGGA GTGCGTGTTC TGCGAGATGA CGCGGCAGCA 
    CCACCCGCAA TGCGCGCGGC GGCTCCCGAA GCGGATCATC CTGGTGCGCC 
    ACGGCGAGAG CCAGGGGAAC CTCGACATGT CCGCCTACAC CACCACGCCC 
    GACTACCGCA TCCCGCTCAC CCCGCTCGGC GTCGACCAGG CCCGCGCCGC 
    CGGGAAGGGC ATCCTCGACG TCGTCTCCTC CGCCGCCAAC TGGAAGGTCT 
    ACTTCTACGT CTCCCCCTAC GAGCGCACCC GCGCCACGCT CCGCGAGATC 
    GGCGCCGCCT TCCCCCGCCA CCGCGTCATC GGCGCCCGCG AGGAGTGCCG 
    CGTCCGCGAG CAGGACTTCG GCAACTTCCA GGTCGAGGAG CGCATGCGCG 
    CCGTCAAGGA GACCCGCGAC CGCTTCGGCC GCTTCTTCTT CCGCTTCCCC 
    GAGGGCGAGT CCGCCGCCGA CGTCTTCGAC CGCGTCGCCA GTTTCTTGGA 
    GTCGCTGTGG AGGGACATAG ACATGGGGAG GCTGGAGCAG GACGCGAGCT 
    GCGAGACCAA CCTGGTGATC GTCTCCCATG GCCTCACCTC GCGGGTCTTC 
    CTCATGAAGT GGTTCAAGTG GACGGTGGAC CAGTTCGAGC GCCTCAACAA 
    CTTCGACAAC TGCGAGTTCA GGGTCATGCA GCTCGGCCCC GCCGGCGAGT 
    ACAGCCTCCT CATCCACCAC ACCAAGGAGG AGCTCCAGCG CTGGGGCCTC 
    TCCCCGGAGA TGATCGCCGA CCAGCAGTGG CGCGCCTCCG CCAACCGCCG 
    CAGCTGGGCC GACGAGTGCT CCTCCTTCCT CGCCACCTTC TTCGACCACT 
    GGAACGAAGA CGACAATGAC GACGACGACG ATGGCAAGGA GGAAAATGGC 
    AAGACCAACA AGTTGCTCGA GTAATAATCT TGCTGCTTGC CTCTACTTGC 
    TCTTTCTTTA GAAATTCCGT TTAAAATTCT TTGGAATTTG ATTCGATTGG 
    TACTACTAGT GTATTTCTCC ATTGGGGCGA TGCAATGTAC TCCCCTTTGC 
    TGATTCTTTT CTGTTTGATC TGTAGCCTGT TCATACATAG TTGCTAGATA 
    CTACATTGAT AAATACTATA TATGATTTGG GG

    Gene models with high sequence identity

    1. AT3G05170.1 [+] show detail - Phosphoglycerate mutase family protein
      E-value: 3e-98; Score: 355.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 0.00000000041
    FPrintScan PRICHEXTENSN 0.00000000041
    FPrintScan PRICHEXTENSN 0.00000000041
    FPrintScan PRICHEXTENSN 0.00000000041
    FPrintScan PRICHEXTENSN 0.00000000041
    superfamily Phosphoglycerate mutase-like 7.1e-36
    HMMPfam Histidine phosphatase superfamily, clade-1 2.5e-29
    PatternScan Phosphoglycerate/bisphosphoglycerate mutase, active site 0
    Gene3D no description 3.2e-31
    HMMPanther PHOSPHOGLYCERATE MUTASE 7.1e-19
    HMMSmart Histidine phosphatase superfamily, clade-1 1.4e-18

    See the detailed result >

    AT3G05170.1

    Model type
    Protein coding
    Short Description
    Phosphoglycerate mutase family protein
    Computational Description
    Phosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT1G08940.1); Has 1056 Blast hits to 1046 proteins in 414 species: Archae - 2; Bacteria - 582; Metazoa - 32; Fungi - 206; Plants - 86; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR