K24044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24044

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24044

Determination of introduced cDNA(s)

  • J023124L24 - Rice Full-length cDNAs - Original: J023124L24

    full reading [+] show sequence

    Nucleotide sequence: J023124L24 - full reading 
    GTATCGTGCA CATCCATATC CACGCGCACA CGCAGCCGGC TGGAAGGAAG 
    AAAAAATGCT GCGGTTCTGG AGGACGCAGA GGAGCGTCAC GTCGTCAGAC 
    GCCTTGTCTG TGAGTAAAAC ATATCGTGGA GATGAACGTC CACATGGACT 
    GCGAGGGCTG CGAGAAGCGC GTGAGGAAGG CCATGTCCCG GCTCGAAGGC 
    GTGAGCACGG TGGAGATCGA CATGGACACG CAGAAGGTGA CGGTGACGGG 
    GTACGTGGAC CGGCGGGAGG TGCTCCGGGC GGCGCGGCGG ACGGGGAGGG 
    CGGCGGAGTT CTGGCCGTGG CCGTACGACG GCGAGTACTA CCCGTTCGCG 
    ATCCAGTACC TGGAGGACGA CACCTACATG GCGACGCACA AGTACTACGT 
    CCACGGCTAC AACGCCCCGG TGATCGGCTC CTACCCCAAC CACGCCTTCA 
    CCCACATCGT CGACGACCAC GCCCTCGCCT TCTTCCACGA CGACAACGTC 
    CACGCCTGCT CCATCATGTG ACCTAAAATA TAATCTTATT TAAAATCCTA 
    CATGCCAGCG ACAGATACAT ATCTGACCAA ATCGAACAAG CTAAGTGACC 
    T

    Gene models with high sequence identity

    1. AT3G56891.1 [+] show detail - Heavy metal transport/detoxification superfamily protein
      E-value: 3e-33; Score: 138.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Heavy metal transport/detoxification protein 12.183
    Gene3D no description 6e-13
    HMMPfam Heavy metal transport/detoxification protein 1.1e-14
    superfamily Heavy metal transport/detoxification protein 1.6e-16
    HMMPanther COPPER CHAPERONE-RELATED 3.6e-51
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 3.6e-51

    See the detailed result >

    AT3G56891.1

    Model type
    Protein coding
    Short Description
    Heavy metal transport/detoxification superfamily protein
    Computational Description
    Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Heavy-metal-associated, conserved site (InterPro:IPR017969); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G18196.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR