K24051

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24051

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24051

Determination of introduced cDNA(s)

  • J013135A09 - Rice Full-length cDNAs - Original: J013135A09

    full reading [+] show sequence

    Nucleotide sequence: J013135A09 - full reading 
    GGCAGAGCCA ATCCCAGTGG CGGCTTCGCC TTCGTGCCCG ACGACCACCT 
    CGAGCAGAAG GAAACGAAAG TGTAGGAAGG ATGGTCTCCT CTACTTCCGG 
    AGGACTCTCG CCGCCGGCGG TTGTGCTGGC CGTGGCGGTT GTGCTGTCGG 
    CGGCGGCGTC ACGGGCGCTG GCGGCGCCGT GCTACCCGCG CGTGTTCTGC 
    TTCGGGGACT CGCTTACAGA CACCGGCAAC ATCGCTTTCC TCTACGGCAA 
    CGACTCCCGC CGGCCCTCGC TGTGGCCACC CTACGGCGAG ACCTTCTTCC 
    ACCGCGCCAC CGGCCGCTCC TCCAACGGCC GCCTCATCAT CGACTTCATC 
    GCTGAAGCGA TGGGGCTGCC GTTCGTGCGG CCGTACTGGG GCGGGCAGAC 
    CGCGGGGAAC TTCGCCAGCG GGGCCAACTT CGCGGTGGGC GGCGCCACGG 
    CGCTCAGCCC GGACTTCTTC CGGGAGAGAG GGGTGCCCAT GGACGACGAC 
    ACCGTGCACC TCGACATGGA GATGGAGTGG TTCCGTGATC TGCTCGGCAT 
    GCTCTGCACC GGCGGCGACA TGGGCGGTTG CAAGGGCATG ATGAATCAAT 
    CTCTTTTCTT GGTTGGAGAA ATCGGAGGCA ATGATTACAA CCTTCCTCTT 
    ATGAGCGGCA TGTCCATTGA AAAGATTCGC AACTTCACTC CTAGTGTCAT 
    TGCCAAAATT TCTTCCATAA TCACCGAATT GATTGGACTT GGGGCCAAGA 
    CACTAGTTGT TCCCGGTAAC ATCCCAATTG GATGTATTCC AATGTACCTC 
    ATGCAATTTG AGAGTGATAA GAAGGAAGAT TATGAGCCAA AGATAGGTTG 
    CCTTAGGTGG ATGAATGAGT TCTCGCAATA CCACAACAAA CTTCTTGTAG 
    ATGAATTGGA AAACTTGCGC AAGCTTCATC TTGATGTGAC CATCATCTAT 
    GCCGATTACT ATGGAGCTGC CATGGAAGTT TTCCTTTCCC CTGAACGATT 
    TGGAATTGAG GATCCTTTGG TCGCTTGCTG TGGTGGAAGA GGACCTTATG 
    GTGTATCTGC ATCTGTACGC TGTGGATATG GCGAATACAA AGTGTGTGAT 
    GACCCAGCAA AATATGCATC GTGGGATGGC TTCCATCCAT CAGAAGCTGC 
    ATACAAGGGC ATTGCAATTG GCCTGCTACA GGGTTCATAC ACTCAACCTC 
    CAATTGTTAG CATCACTAAT TCTTGTCCGC AGATAATTGG CCTTGGTTCC 
    TCTGTTGAAC ACAAGGCCAT GTACGACTTG TAATTCTGTA ATTATATTTT 
    GTTATTATTA TACACAATAT GTGATTAAAA TATGTAAAGG AATATTGTGG 
    TATTGTTGTC TCATTATAGA ACCACAGTAC TGTTCTACAT CACAACTGTT 
    ACTAAATGAC ATGTTGACTT TTCC

    Gene models with high sequence identity

    1. AT2G27360.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 2e-92; Score: 336.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 0.000013
    HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 0.000013
    HMMPfam Lipase, GDSL 2.4e-24

    See the detailed result >

    AT2G27360.1

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28610.2); Has 3560 Blast hits to 3506 proteins in 242 species: Archae - 0; Bacteria - 391; Metazoa - 0; Fungi - 2; Plants - 3156; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR