K24051

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24051

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24051

Determination of introduced cDNA(s)

  • J013135A09 - Rice Full-length cDNAs - Original: J013135A09

    full reading [+] show sequence

    Nucleotide sequence: J013135A09 - full reading
    GGCAGAGCCA ATCCCAGTGG CGGCTTCGCC TTCGTGCCCG ACGACCACCT 
    CGAGCAGAAG GAAACGAAAG TGTAGGAAGG ATGGTCTCCT CTACTTCCGG
    AGGACTCTCG CCGCCGGCGG TTGTGCTGGC CGTGGCGGTT GTGCTGTCGG
    CGGCGGCGTC ACGGGCGCTG GCGGCGCCGT GCTACCCGCG CGTGTTCTGC
    TTCGGGGACT CGCTTACAGA CACCGGCAAC ATCGCTTTCC TCTACGGCAA
    CGACTCCCGC CGGCCCTCGC TGTGGCCACC CTACGGCGAG ACCTTCTTCC
    ACCGCGCCAC CGGCCGCTCC TCCAACGGCC GCCTCATCAT CGACTTCATC
    GCTGAAGCGA TGGGGCTGCC GTTCGTGCGG CCGTACTGGG GCGGGCAGAC
    CGCGGGGAAC TTCGCCAGCG GGGCCAACTT CGCGGTGGGC GGCGCCACGG
    CGCTCAGCCC GGACTTCTTC CGGGAGAGAG GGGTGCCCAT GGACGACGAC
    ACCGTGCACC TCGACATGGA GATGGAGTGG TTCCGTGATC TGCTCGGCAT
    GCTCTGCACC GGCGGCGACA TGGGCGGTTG CAAGGGCATG ATGAATCAAT
    CTCTTTTCTT GGTTGGAGAA ATCGGAGGCA ATGATTACAA CCTTCCTCTT
    ATGAGCGGCA TGTCCATTGA AAAGATTCGC AACTTCACTC CTAGTGTCAT
    TGCCAAAATT TCTTCCATAA TCACCGAATT GATTGGACTT GGGGCCAAGA
    CACTAGTTGT TCCCGGTAAC ATCCCAATTG GATGTATTCC AATGTACCTC
    ATGCAATTTG AGAGTGATAA GAAGGAAGAT TATGAGCCAA AGATAGGTTG
    CCTTAGGTGG ATGAATGAGT TCTCGCAATA CCACAACAAA CTTCTTGTAG
    ATGAATTGGA AAACTTGCGC AAGCTTCATC TTGATGTGAC CATCATCTAT
    GCCGATTACT ATGGAGCTGC CATGGAAGTT TTCCTTTCCC CTGAACGATT
    TGGAATTGAG GATCCTTTGG TCGCTTGCTG TGGTGGAAGA GGACCTTATG
    GTGTATCTGC ATCTGTACGC TGTGGATATG GCGAATACAA AGTGTGTGAT
    GACCCAGCAA AATATGCATC GTGGGATGGC TTCCATCCAT CAGAAGCTGC
    ATACAAGGGC ATTGCAATTG GCCTGCTACA GGGTTCATAC ACTCAACCTC
    CAATTGTTAG CATCACTAAT TCTTGTCCGC AGATAATTGG CCTTGGTTCC
    TCTGTTGAAC ACAAGGCCAT GTACGACTTG TAATTCTGTA ATTATATTTT
    GTTATTATTA TACACAATAT GTGATTAAAA TATGTAAAGG AATATTGTGG
    TATTGTTGTC TCATTATAGA ACCACAGTAC TGTTCTACAT CACAACTGTT
    ACTAAATGAC ATGTTGACTT TTCC

    Gene models with high sequence identity

    1. AT2G27360.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 2e-92; Score: 336.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 1.3e-05
    HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 1.3e-05
    HMMPfam Lipase, GDSL 2.4e-24

    See the detailed result >

    AT2G27360.1

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28610.2); Has 3560 Blast hits to 3506 proteins in 242 species: Archae - 0; Bacteria - 391; Metazoa - 0; Fungi - 2; Plants - 3156; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR