K24125

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24125

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24125

Determination of introduced cDNA(s)

  • J023080K20 - Rice Full-length cDNAs - Original: J023080K20

    full reading [+] show sequence

    Nucleotide sequence: J023080K20 - full reading 
    GACGAGGAAC ACACACACCC CTACCCGTCT CTGTTCATCT CCACATCTTG 
    TCTTCTCGCT GTTGACTTCG AGCGGAGACT AGACTAGCTA CTACTCGGAA 
    TGGGGAAGGA GATGAATCTG ATCCGAGAAG ACGAGTACGG CGGCGGCGGC 
    GTCGGGTTCG AGCCGACGGA GGACGAGCTG ATGCTCCACT TCCTCCGTCC 
    GCAGCTGCGC GGGTTCGCGC CGCGCGTGGC GGGCGCCGTG GTGGAGGCCG 
    ACCCCTGCGG CGCGGCGCCG TGGGAGCTCC TGGCGCGGCA CGGGAGGCGG 
    GAGGAGGGGT TCTTCTTCTC GGCGCGCGCG CGGAGGAAGC CCTCGGTGCG 
    GCGGACCGTG GCGGGCTGCG GCGGCGGCGG TGGCGGCGGT GGCGCGTGGA 
    TGCACAGCTC CACCAAGAAC GGGCAGTCCG TGACCGACCT CGGCGTGGTG 
    GTGCGGTGGT GCAGGATCAA CTACTGCTTC TACGTGCGCG GCGAGATGGG 
    GCAGCAGCGG AGCACCGGGT GGATGATGGC CGAGTACGAG ATCACCGACC 
    CGCGGTGCTA CCGCCGCGCC GACGACGGCG AGGAGGACGA CTTCTGGGTT 
    CTCTGCCATG TCAGGAAGAG CTCGAGGCCC CAAGCCGCCA AGATCTCTCC 
    AGCCAAGCCA GCACGGCGGC GCAAGCCCGC CGCCGCCGCC GCCGCGGATG 
    TCCGGGCTGC GTGATCCGGC CGACGGCGGA GATCACGAGG TTTGCCTCGC 
    GTTGGGATTC GACTTCGGTT ATACTTTTGC TTTGGAATTG TGTTCCTTTG 
    CTTTATTCCT CCTCTAGCAT CTGCCCATAC ATTCCGTGTG ATGAACACTG 
    CGAATCAAAT GGGACGTTTA AGATGTTGTT GTTGTACTGA TAGCGTGATT 
    GAATTCATGG CCTCTTTCTG TC

    Gene models with high sequence identity

    1. AT3G04070.2 [+] show detail - NAC domain containing protein 47
      E-value: 5e-09; Score: 58.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam No apical meristem (NAM) protein 1.7e-16
    ProfileScan No apical meristem (NAM) protein 25.772
    superfamily No apical meristem (NAM) protein 2.5e-33

    See the detailed result >

    AT3G04070.2

    Model type
    Protein coding
    Short Description
    NAC domain containing protein 47
    Computational Description
    NAC domain containing protein 47 (NAC047); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC-like, activated by AP3/PI (TAIR:AT1G69490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR