K24127

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24127

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24127

Determination of introduced cDNA(s)

J013070K24 - Rice Full-length cDNAs - Original: J013070K24

full reading [+] show sequence

GAGGAGTGGA GAGGAGAATC CGCCGCTGCG CCGTCTTCTT CTCCATTGAA 
GCCAAGCTCC CCCAGGCCTT CTCGTTCTCC CCCTCCTCCT CGAGCTCTCG 
CTGGTGCGGG GAGCGAAGTG GAGAGGAGAG GCCGAGAGGG ACGAGAGATC 
GAGAGGGAGA GGGAGCACCG AAGCAGCGGG CGGCAGCATG CGGCCTTCGC 
TCCGTACTAT CTATTTTCTT CTTTTGCTAC TTCCACATGT GGTTTTTTCT 
AGACCACTCT TTCCACTACC AAGCAAGAGT AATGGAATAG AGAAGAGACC 
CTTACAAACT TTTCGACCAT ATAACATTGC TCACCGTGGC TCAAATGGGG 
AAATTCCTGA GGAAACAGCT GCTGCTTACC TGAGGGCTAT TGAAGAAGGT 
GCGGATTTTA TAGAAACGGA CATCCTTGCT AGCAAAGATG GGGCCTTGAT 
CTGCTTTCAT GATGTAACAC TGGATGCTAC AACTGACGTT GCCAGCCGCA 
AGGAGTTTTC CAATAGAAGA AGAACCTACG AGGTGGAATG GTTCAACGCT 
ACTGGCTGGT TTGTAGTGGA CTTCACACTT GAGGAACTTA AAACACTGAA 
AGTCAATCAG CGATACCCAT TCAGAGACCA ACAATACAAT GGCAAGTTTT 
CAATTATCAC ATTTGAAGAA TTCATTTCTA TTGCCTTGGA TGCAAGCAGA 
ACTGTCGGAA TATACCCAGA GATGAAAGAT CCAGTTTTTA TCAACAAGCA 
TGTCAAGTGG GATGGTGGGA AGAAGTTTGA GGACAAATTT GTGGATACCT 
TACTGAAGTA TGGATATAAA GGCCAATATA TGTCAGAAAA TTGGCTGAAG 
CAGCCGTTGT TTATACAATC TTTTGCTCCT ACTTCCCTTG TACATGCATC 
AAAGTTGACA GACTCTCCCA AGATATTCCT GATTGACGAT TTCTCAGTGA 
GAACACAAGA TACAAACCAG TCATACTGGG ACATCACTTC TGATGACTAC 
CTAGCATATA TTAGTAACTA TGTTGTTGGC CTTGGTCCAT GGAAAGATAC 
GGTTGTTCCA GCAGCCAAAA ACTATACGAT GGCACCGACT GATCTTGTTG 
CAAGAGCACA TGCTCATAAT CTTCAGGTAC ACCCGTACAC ATACAGGAAC 
GAGAACCAAT TCCTGCACCT CAACTTCCAT CAGGACCCTT ATGCTGAGTA 
TGATTTCTGG ATAAACAGCA TGGGGGTCGA TGGATTGTTC ACTGATTTCA 
CTGGATCCCT GCACCGTTAC CAGGAACTGG TAGCTCCACA TGCGAAGGAT 
GAAACTGCAA ACAGCCTCCT AGTAAAAATT GCTCAAATGA TCTCCCAATA 
TGAAGGTTTC TGATCATGTT TTCCATTTTT CCGTTAATCG ACATGCTTAT 
ATACACGCAT TAGTGATCAA GGGTGACCTT GAATGTTACA GAACAAAAAA 
AAAAAGAAAA AAATACTTGT TTTCTGGTGG CTAGCAGTTA GAACGGATTG 
TAGACACCTC TATAACTATA AATCCCTGAA TTGCGGGGAG AAATTTCTAC 
AGTTGTAATA ATTGTCTTTA AAACAGTTGT ATCTGATTAG TTCCTTGAAA 
CAAAGTTCAT TGATGGGC

Gene models with high sequence identity

AT5G08030.1 [+] show detail - PLC-like phosphodiesterases superfamily protein
E-value: 4e-149; Score: 525.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	3.5e-72
HMMPanther	Glycerophosphoryl diester phosphodiesterase	5.6e-35
HMMPfam	Glycerophosphoryl diester phosphodiesterase	1.3e-62
superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	5.1e-68

See the detailed result >

AT5G08030.1

Model type: Protein coding
Short Description: PLC-like phosphodiesterases superfamily protein
Computational Description: PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G74210.1); Has 6803 Blast hits to 6670 proteins in 1728 species: Archae - 62; Bacteria - 5228; Metazoa - 196; Fungi - 127; Plants - 339; Viruses - 7; Other Eukaryotes - 844 (source: NCBI BLink).
Link: InterPro Scan - TAIR