K24148

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24148

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24148

Determination of introduced cDNA(s)

  • J013077H13 - Rice Full-length cDNAs - Original: J013077H13

    full reading [+] show sequence

    Nucleotide sequence: J013077H13 - full reading 
    GAAACTTACG ACCATACGGA CTTTCTCGGA TATTGCCCAT GCAGATACTA 
    ATTTGTGCAA ATGCACCGCC GCACTTGGCG TTGCTCGACC GCCGGCGGTG 
    GTCCCCGGCG TGGGATCGCC GGCGACCAGA TCATCATACG CGTATGCACG 
    CTCCGCGTCC ACGTGATAAA GAGCAATCAA AGGGAATAGT ATATTGCAAA 
    GCCAAAGAAA CACAAGAAAC AGTTGACAGG AGGAGCGGTG GAAAAGACGA 
    ACCGCGGGAC ATGGAAGAAA TGGTCAATAC CATCAGAGTA ATGCTAAGGA 
    CAATGGGCGA TGGGGAGATA AGTGCTTCTG CCTATGACAC CGCGTGGGTC 
    GCACTTGTGA AGAATCATAA CGGCAGCGAC AGCCCACAAT TCCCCTCGAC 
    CATTGATTGG ATCTCTCACA ATCAGCTGCC AGATGGTTCA TGGGGTGATG 
    ACTTGTGCTT TCTAGTTCAT GATAGGCTCC TCAACACCCT AGCTTGTGTG 
    ATTGCGCTGA TGGAGTGGAA GGTTCATGGT GACAAGCGTG AGAAAGGTTT 
    GTCGTTTATT CGGGAAAATA TATGGAGGCT GGCCCAAGAG GAAGAGGCAT 
    GGATGCCAGT TGGTTTTGAG ATCACCTTCC CCTCACTTTT AGAGATAGCC 
    AAGGACTTGG CTCTTGACAT CCCTTATGAT GACCCTGCTT TGCACAAGAT 
    ATATGCCCAA AGGGAGCTAA AGCTTAAGAA GATCCCAAGA GAAATACTTC 
    ACTCCCTACC AACAAGTTTG CTTCTTAGCA TAGAGGGACT GCGAGGCTTG 
    GACTGGAAGA GGCTCCTCAA GCTCCAACTT TCAGATGGAT CCTTCCTATC 
    CTCACCCGCT GCAACGGCCT ATGTTTTGAT GCAAACGGGC GACAAGAAAT 
    GTCTCGAGTT CCTTGATGGA ATTGTTAGCA AATTCCATGG GGGAGGTAAA 
    TAATGATCTT TCAATTATAA ATAAATTCTC ATTCGAGACT TCATTTAATT 
    TCTAGTTGAA TAGAACCTAT TTGATGCAAA GTTCGTTTCT GTACAGTTCC 
    AGAATTGAAA AAAATGGATA TCATTTTTGA TAGCCGTAAC ATTATTCAAT 
    CGGATTTGTC CAGATATGCA TCC

    Gene models with high sequence identity

    1. AT4G02780.1 [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
      E-value: 4e-74; Score: 275.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G02780.1

    Model type
    Protein coding
    Short Description
    Terpenoid cyclases/Protein prenyltransferases superfamily protein
    Curator Summary
    Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis
    Computational Description
    GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR