K24212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24212

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24212

Determination of introduced cDNA(s)

  • J023063K11 - Rice Full-length cDNAs - Original: J023063K11

    full reading [+] show sequence

    Nucleotide sequence: J023063K11 - full reading 
    GCTCCTCCCT CGGTGATCTG CCTCGCTGGG GCATCTCTAA AAGCATCCGA 
    CTCCGACGCC ACCACCACCA GTTCACCACC GCTGAAAGAA TCAGCAGCAG 
    CAGCAGAGGC CACACGAGGA GATGAAGAAG TGCCCGTCGG AGCTGAACTT 
    CGAGGCGTTC TTCCACGGCG AGAGGGGGGA GGACGACGCC GACGCCGCCG 
    CCGACCAGAA GCCCGGCGGC GGCCCGCACC CGCCGCCGTT CGCCATGTTC 
    TCCGCCGCCG ACCTCTCCAG CTTCGGCTTC GCGGACTCGG TGACGAGCAC 
    CATCACTGGG GTCATTCCCA ATCACATATG GCCCCAGTCC CAGAGCCTCA 
    ACGCACGGCA TCCTGCAGTC TACACAATTG AGTCGCAATC ATCAATCTGT 
    GCAGCAGCAA GTCCCACGTC AGCTACCACT CTGAACATGA AGGAGAGCCA 
    AACTCTGGGA GGCACAAGTG GTTCAGATTC TGACAGTGAG TCGCTGTTGG 
    ATATAGAGGG CGGTCCATGC GAACAAAGCA CAAACCCACT GGACGTTAAG 
    AGAATGAGAA GGATGGTTTC CAACCGGGAG TCTGCTCGTC GATCAAGGAA 
    GAGAAAGCAA GCTCACTTAG CTGATCTCGA GACGCAGGTT GACCAGCTCC 
    GGGGCGAAAA CGCATCGCTT TTCAAGCAGT TGACAGATGC CAATCAGCAA 
    TTCACGACGG CGGTCACGGA CAACAGAATC CTCAAATCAG ACGTGGAGGC 
    CCTCCGGGTC AAGGTGAAGA TGGCGGAGGA CATGGTGGCG CGGGGGGCGC 
    TGTCGTGCGG CCTCGGCCAC CTGGGCGGGC TGTCGCCGGC GCTGAACCCC 
    CGGCAGGGGG CGTGCCGCGT CCCCGACGTG CTCACCGGGC TGGACTACGC 
    CGGCGACGAC CCCTTCACCG GGCTGTCCCC GCCGGAGCAG GTGCAGATGC 
    CCGGCGGTGG CGAGGTGGGT GACGCCTGGG GCTGGGACAA CCACTCCAAT 
    GGCGCCATGT CCAAGTGAAA ACTACTTCTT ACTGCTTTGT CAGCTCAGCT 
    ACGTATAAAA ATGTGATGTC CCAAGTGAAC GGACTTGAGT TTTTCAGAGT 
    CCTCGTGTCG TGTCAAGTGT CGTCCTGTAA TAGAACTGAC TAGCTATATA 
    TAGTACACAG TATTTGGTAA GAGACTGAAA AACTACGAAG TATAAATGTT 
    GTGGAGGT

    Gene models with high sequence identity

    1. AT5G24800.1 [+] show detail - basic leucine zipper 9
      E-value: 6e-31; Score: 132.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 2.2e-17
    Gene3D no description 0.00024
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 11.185
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    HMMPfam bZIP transcription factor, bZIP-1 0.000000000000027
    Coil coiled-coil 0
    HMMPanther CAMP-RESPONSE ELEMENT BINDING PROTEIN-DROSOPH 0.00000088
    HMMPanther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 0.00000088

    See the detailed result >

    AT5G24800.1

    Model type
    Protein coding
    Short Description
    basic leucine zipper 9
    Curator Summary
    Encodes bZIP protein BZO2H2.
    Computational Description
    basic leucine zipper 9 (BZIP9); FUNCTIONS IN: DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G28770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR