K24227

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24227

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24227

Determination of introduced cDNA(s)

  • J023043D01 - Rice Full-length cDNAs - Original: J023043D01

    full reading [+] show sequence

    Nucleotide sequence: J023043D01 - full reading 
    GGCTGCAGCA ATCCAAGACG AAGCTGAGAG AAAGAAGACG AATCGAGAGC 
    AAAAGCTCAA TCTAAGCTCG CAAGAAAGCT CGAGTAGCAG CCATGGCTTT 
    AGCACCCACG TCTCTCCGGT GCTTCCTCAC CGGAAGGCCA CTGTGCAGTG 
    CGGGCAGCAC GGCGGCCGTG CTCCCGGCGC CGAAGCCGAC GAGGCGGCGG 
    CCATCGGCGA GGCTCTCGTG CAGGGCGGCC AATGAGGCGC CGTCGACGCG 
    GGGTGATCTT CCGGTGAAGC TTGGCAAGCT GGCGATGGTC GCGCTGGCCG 
    CCGGCGTGCT CGCGCTCTCG CCTGTCGACG ATGCCATGGC GGCCAAGTCC 
    GGCGGGAGGG TCGGCGGGCA GGCGTTCCGG TCTGCGCCAC GGTCCGCGCC 
    ACGGCCGTCT GGTCCACGGA TAAACAATTC GAGGACGAAC ATCTACATCA 
    ACCCACCGGT GGCGCCGCCT CTGGTCGGCG GTTACGGCTA TGGCTACGGC 
    TACGGTTGGT CGCCGTTCTC GTTCTTCGCT CCCGGCCCGA GCGTGGCCGT 
    CGGTGTCGGC GGCGGCTTCG ACACGCTGGT GCTGTTCATC GTGCTCGGAA 
    CGATCGTTGG CGCTGTCAGG CGGTTTCTCA ACAGGAACGA CGACGACTAC 
    GATGATTACT GAATTAATTA CTGTGTTGCT GATACTGTTA GGAACGATGT 
    CATCAGATCA TACCGTGTGT AATGTGATAT AGCGAGGCTA TTTTTTTTCA 
    TGTCAATTCT AAGGGAACAG ATCGGTAAGC TAGAAGTG

    Gene models with high sequence identity

    1. AT5G57345.1 [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1...
      E-value: 6e-14; Score: 74.70

     

    InterPro Scan Digest

    See the detailed result >

    AT5G57345.1

    Model type
    Protein coding
    Computational Description
    unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR