K24228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24228

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24228

Determination of introduced cDNA(s)

  • J023083K19 - Rice Full-length cDNAs - Original: J023083K19

    full reading [+] show sequence

    Nucleotide sequence: J023083K19 - full reading 
    GATTTCCCCT CTCCCCACCT CCGCGTCTCC TCACCATGGC TTCCGCCTTC 
    TCCCCCGCCA CCGCCGCGCC CGCCGCGTCG CCGGCCCTCT TCTCCGCCTC 
    CACCTCCCGG CCTCTCTCCC TCACCGCCGC CGCCGCTGCC GTCTCAGCCC 
    GTATCCCGTC ACGGAGAGGG TTCCGCCGCG GCCGCTTCAC CGTCTGCAAT 
    GTAGCCGCCC CCTCCGCCAC CCAGCAGGAG GCTAAGGCGG CGGGCGCGAA 
    GGAGAGCCAA CGGCCGGTGT ATCCGTTCGC GGCGATCGTG GGGCAGGACG 
    AGATGGAGCT GTGCCTGCTG CTCAACGTCA TCGACCCTAA GATCGGCGGT 
    GTCATGATCA TGGGAGACCG TGGCACCGGC AAATCCACCA CCGTCCGCTC 
    GCTCGTCGAC CTGCTCCCGG ATATCCGCGT CGTTGTTGGC GACCCTTTCA 
    ATTCCGACCC TGACGATCCC GAGGTCATGG GCCCTGAGGT CCGGGAACGC 
    GTGCTGGAGG GTGAGAAGCT TCCTGTTGTC ACGGCCAAGA TCACCATGGT 
    AGATCTTCCC TCCCCCAACA ACTCGGCCAA ATTCAAAGCA AAGCCGCCAT 
    TACTGCTCCT CTTCCATTCC ACTGGGGACG TACGAGCTCC GCGCATCCCT 
    TCCATTCCAT TACTGACCTT GGCTGCTGCG GCTGCAGTGC AGAGGGGGTT 
    TGGTGGTGCG GTTGATTTGA GCAATAAATT CTCTAGGGGG GAGGGAGGTA 
    TCGGTCATGG CTGCCGCTGC TGCAAGGAGG GGCTCATCGC TGCTCTCTCG 
    CTGCCTGCTG TCCAGGCCCG CCGCCGCCGC CTCGCCTGCT GTCCCCTCTG 
    CGCTCCGCAG GGCAGATGGG ACACAAGGAT TGTTGCCGGG AATCCTTCAG 
    AGGTTCAGCA CTGCAGCAGT AGCAGAGGAG CCCATATCAC CCCCAGTCCA 
    AGTGAACTAC ACTCAGCTCC TCATTGATGG AAAATTCGTT GATTCAGCAT 
    CTGGCAAAAC TTTCCCAACT CTGGACCCTC GTACCGGGGA GCTGATTGCC 
    CATGTGGCTG AAGGCGATGC GGAGGATATT AACCGTGCGG TTCATGCGGC 
    CCGCAAGGCT TTCGATGAAG GGCCATGGCC AAAGATGACT GCCTATGAGA 
    GATCCCGGAT TCTGTTGCGG TTTGCTGACT TGATTGAGAA GCACAACGAT 
    GAAATTGCTG CATTGGAGAC ATGGGACAAC GGCAAGCCGT ATGCGCAAGC 
    TGCCAACATT GAAGTGCCAA TGGTGGCACG GCTGATGCGG TACTATGCTG 
    GTTGGGCTGA CAAGATCCAT GGGCTTGTCG TGCCGGCTGA CGGCCCACAC 
    CATGTACAGG TGCTGCACGA GCCCATTGGT GTCGCAGGTC AGATCATCCC 
    ATGGAACTTT CCGCTTCTGA TGTTTGCGTG GAAAGTTGGC CCTGCTTTGG 
    CTTGTGGAAA CACTGTTGTG CTCAAGACGG CTGAGCAAAC TCCTCTGTCT 
    GCTCTATTTG CTTCTAAGCT GTTGCATGAG GCTGGACTCC CAGACGGTGT 
    TGTTAACGTG GTATCTGGTT TTGGACCTAC TGCTGGTGCT GCTCTTGCTA 
    GTCACATGGA TGTCGATAAG ATTGCATTCA CTGGATCGAC CGATACTGGA 
    AAAGTCGTCC TTGAGTTGGC TGCAAGGAGC AACCTTAAGT CAGTGACACT 
    GGAGCTAGGA GGCAAGTCTC CTTTCATCAT CATGGATGAT GCTGATGTTG 
    ACCATGCTGT TGAGCTTGCG CATTTTGCAC TGTTCTTTAA CCAGGGACAA 
    TGTTGCTGTG CTGGGTCTCG TACATTTGTG CATGAGCGTA TCTATGATGA 
    GTTCGTGGAG AAGGCCAAGG CTCGTGCTCT CAAGCGTGTG GTTGGTGATC 
    CATTCAAGAA TGGTGTTGAA CAGGGCCCTC AGATTGATGA CGAGCAATTC 
    AACAAGATCT TGCGCTACAT CAAGTATGGT GTTGACAGTG GAGCCAACCT 
    TGTGACTGGT GGCGACAGAT TAGGTGACAA AGGTTACTAC ATCCAGCCAA 
    CAATTTTCTC GGATGTACAG GATAACATGA GGATTGCTCA AGAAGAGATA 
    TTTGGCCCTG TGCAGTCCAT TCTGAAGTTC AATGATCTGA ACGAGGTCAT 
    CAAGAGGGCA AATGCAAGCC AGTACGGGCT GGCTGCTGGG GTCTTCACCA 
    ACAACCTGAA CACGGCCAAC ACCCTGACCC GCGCGCTCAG GGTCGGGACC 
    GTGTGGGTGA ACTGCTTCGA CGTCTTCGAC GCCGCGATCC CGTTCGGCGG 
    ATACAAGCAG AGCGGCATCG GGAGGGAGAA GGGCATCGAC AGCCTGAAGA 
    ACTACCTGCA GGTCAAGGCC GTCGTCACGC CGATCAAGAA CGCCGCGTGG 
    TTGTAAACAC ATAGATGTTT GGACATTTCA GAACTGGGGA AGAAATAGGT 
    ATAATCTTAT GGACGGATGC GAAAATGGCG ATAAATTATG GCGATAAGAT 
    TATGATGATG ATGATGAAGA AGAAGAAGAG GAGGAGGAAG AACAGCTGAA 
    ATAAGCTTGT CCTAGCATGG GGCTGGCATT GTCTCTAATA AACCTTGTGG 
    TTGGTGCTCA TGTTACTGAT GGAGTATATT GTAGAAGCAG ATTTATGTTC 
    ATTATGAAAT ATATATCGCT TGTTTGGGAT G

    Gene models with high sequence identity

    1. AT1G23800.1 [+] show detail - aldehyde dehydrogenase 2B7
      E-value: 0; Score: 828.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aldehyde dehydrogenase, conserved site 0
    PatternScan Aldehyde dehydrogenase, conserved site 0
    superfamily Aldehyde/histidinol dehydrogenase 5.9e-191
    superfamily P-loop containing nucleoside triphosphate hyd 2.3e-14
    Gene3D Aldehyde dehydrogenase, N-terminal 1.7e-110
    Gene3D no description 4.8e-15
    HMMPanther ALDEHYDE DEHYDROGENASE 2e-292
    HMMPanther Aldehyde dehydrogenase 2e-292
    HMMPfam Aldehyde dehydrogenase 3.5e-184

    See the detailed result >

    AT1G23800.1

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 2B7
    Curator Summary
    Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.
    Computational Description
    aldehyde dehydrogenase 2B7 (ALDH2B7); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 60835 Blast hits to 60447 proteins in 2994 species: Archae - 474; Bacteria - 34339; Metazoa - 2649; Fungi - 2135; Plants - 1675; Viruses - 0; Other Eukaryotes - 19563 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR