K24229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24229

Determination of introduced cDNA(s)

  • J013049K21 - Rice Full-length cDNAs - Original: J013049K21

    full reading [+] show sequence

    Nucleotide sequence: J013049K21 - full reading 
    GTCTCTCACT TTTCCAAACC ATCAACGTGC CCTTCTATTT CCTTCTTCCC 
    TTCCTCCGAG GGCTTCTGAT CCGGAGAGAC AGAGATGATT GGGAGCAGAG 
    GCGGCGGCGG TGGCGCGGCG CCGAGGCCGA GGCGGCGGAG CGACCCGGGC 
    GACAGCCGCG ACCTCTCCGT GGCCACCACC ACGGAGTCGT ACAACTCCGA 
    GAGGTCCGTG GGGAGCGGCG GCGGCCGCGG GACCGCCTTC CTCGACGCCT 
    TCCGGTCATG CTTCGTCTCC GGGGAGGCGC AGGCGCGCTC CCCGGAGACC 
    TCGTCGTTGT CCGACGACTT CCATCCCTCA CAACAGCTAT CACAGTCGAT 
    AAGCTCACAA GGTTCTAGCA GTGGAAGCAA TTTTGAGATG CGGAGATCAA 
    TGAAAGGACT GTATAATCCA ATGCATAGAA ATTCTTCAGG AAAGGAGATC 
    CCTGGAAGCA CACAGTTCTC CTTACCACAG ATCCAGAAAG CAACCAAAAA 
    TTTCTCGCCA AACCTGAAGA TTGGGCAGGG CGGTTCCGGG ACAGTATACA 
    AAGGTCAGCT TAATGACGGC ACTCTTATCG CCGTCAAACG GGCCAAGAAG 
    AATGTGTACG ACAAGCATAT GGGTCGTGAG TTCCGGAACG AGATTGAGAC 
    GTTGCAATGT ATCGAGCACC TTAATTTGGT AAGGTTTCAT GGGTACCTGG 
    AGTTTGGTGG TGAGCAGTTA ATCATTGTTG AGTATGTTCC CAATGGAAAT 
    CTTCGTGAAC ACCTTGATTG TGTCAATGGA AAAATTCTTG AATTTTCTCT 
    AAGATTGGAT ATTTCAATCG ATGTGGCTCA CGCTGTTACA TATCTTCACA 
    CCTACTCAGA TCACCCAGTC ATCCACAGGG ACATCAAATC GTCAAACATT 
    CTTCTCACAA ACAACTGTAG GGCAAAGGTT GCTGACTTTG GATTTGCCAA 
    ACTAGCTCCA ACTGATGCTA GCCATGTCTC AACCCAAGTA AAAGGAACAG 
    CAGGCTATCT TGATCCTGAA TATCTCAGAA CATACCAGCT CAATGAGAAG 
    AGTGATGTCT ACTCCTTTGG AGTTCTTCTG GTGGAGTTGA TAACAGGGAG 
    GCGCCCGATA GAACCAAGGA GAGCTATCGT CGAGCGTGTT ACTGCAAAAT 
    GGGCAATGGA AAAATTTGTT GAGGGAAATG CAATACAAAC GCTGGATCCA 
    AATCTAGAAG CAACTGATGC GATCAACCTG GCCGTCGAGA AAACGTACGA 
    GCTGGCTCTG CAGTGCTTAG CTACAACTAA GAGGAACAGA CCAAGCATGA 
    GGCGATGCGC TGAGATCCTA TGGAGCATAC GCAAAGATTT CAGGGAGTTG 
    GATATACCAA CCGCATCCCT GAACTGAACT GAGACAGTTC ACTTGGAGCA 
    ATCAAGAAAA GCTGCACTCC AGTTTGCCTC TCTTCAAAGC GTGGTGGTAT 
    GAATCACCCG ATTGCTGGAT GATGAATTTA TTCCTTCAGG ATGTGGTCTA 
    AGTAGTTGTG ATTGTGAACG GGACTGGTGA TCTTCCTAGG AATTGTGTGT 
    TCACCAGCTA GCAACTAGGA ACAATTGCAT AGCATATTCT GTACATGATA 
    AATTGTTGCT GTGAGCAAGA CAGACACAGA TACTATATAA TGGTATATTG 
    GTTGAGGATG CAATTTTGTT GTGATTATTT AAAACTTCCA AAAGAACACA 
    CAAAGTTATA TACAAAATCG TAACG

    Gene models with high sequence identity

    1. AT4G00330.1 [+] show detail - calmodulin-binding receptor-like cytoplasmic kinase 2
      E-value: 1e-107; Score: 387.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 8.6e-39
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.2e-24
    ProfileScan Protein kinase, catalytic domain 37.997
    Gene3D no description 5.1e-18
    Gene3D no description 1.1e-47
    HMMPanther WALL-ASSOCIATED KINASE 7.8e-153
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.8e-153
    superfamily Protein kinase-like domain 1.1e-76
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 6.4e-47

    See the detailed result >

    AT4G00330.1

    Model type
    Protein coding
    Short Description
    calmodulin-binding receptor-like cytoplasmic kinase 2
    Curator Summary
    high overall homology to CRCK1
    Computational Description
    calmodulin-binding receptor-like cytoplasmic kinase 2 (CRCK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calmodulin-binding receptor-like cytoplasmic kinase 1 (TAIR:AT5G58940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR