K24229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24229

Determination of introduced cDNA(s)

  • J013049K21 - Rice Full-length cDNAs - Original: J013049K21

    full reading [+] show sequence

    Nucleotide sequence: J013049K21 - full reading
    GTCTCTCACT TTTCCAAACC ATCAACGTGC CCTTCTATTT CCTTCTTCCC 
    TTCCTCCGAG GGCTTCTGAT CCGGAGAGAC AGAGATGATT GGGAGCAGAG
    GCGGCGGCGG TGGCGCGGCG CCGAGGCCGA GGCGGCGGAG CGACCCGGGC
    GACAGCCGCG ACCTCTCCGT GGCCACCACC ACGGAGTCGT ACAACTCCGA
    GAGGTCCGTG GGGAGCGGCG GCGGCCGCGG GACCGCCTTC CTCGACGCCT
    TCCGGTCATG CTTCGTCTCC GGGGAGGCGC AGGCGCGCTC CCCGGAGACC
    TCGTCGTTGT CCGACGACTT CCATCCCTCA CAACAGCTAT CACAGTCGAT
    AAGCTCACAA GGTTCTAGCA GTGGAAGCAA TTTTGAGATG CGGAGATCAA
    TGAAAGGACT GTATAATCCA ATGCATAGAA ATTCTTCAGG AAAGGAGATC
    CCTGGAAGCA CACAGTTCTC CTTACCACAG ATCCAGAAAG CAACCAAAAA
    TTTCTCGCCA AACCTGAAGA TTGGGCAGGG CGGTTCCGGG ACAGTATACA
    AAGGTCAGCT TAATGACGGC ACTCTTATCG CCGTCAAACG GGCCAAGAAG
    AATGTGTACG ACAAGCATAT GGGTCGTGAG TTCCGGAACG AGATTGAGAC
    GTTGCAATGT ATCGAGCACC TTAATTTGGT AAGGTTTCAT GGGTACCTGG
    AGTTTGGTGG TGAGCAGTTA ATCATTGTTG AGTATGTTCC CAATGGAAAT
    CTTCGTGAAC ACCTTGATTG TGTCAATGGA AAAATTCTTG AATTTTCTCT
    AAGATTGGAT ATTTCAATCG ATGTGGCTCA CGCTGTTACA TATCTTCACA
    CCTACTCAGA TCACCCAGTC ATCCACAGGG ACATCAAATC GTCAAACATT
    CTTCTCACAA ACAACTGTAG GGCAAAGGTT GCTGACTTTG GATTTGCCAA
    ACTAGCTCCA ACTGATGCTA GCCATGTCTC AACCCAAGTA AAAGGAACAG
    CAGGCTATCT TGATCCTGAA TATCTCAGAA CATACCAGCT CAATGAGAAG
    AGTGATGTCT ACTCCTTTGG AGTTCTTCTG GTGGAGTTGA TAACAGGGAG
    GCGCCCGATA GAACCAAGGA GAGCTATCGT CGAGCGTGTT ACTGCAAAAT
    GGGCAATGGA AAAATTTGTT GAGGGAAATG CAATACAAAC GCTGGATCCA
    AATCTAGAAG CAACTGATGC GATCAACCTG GCCGTCGAGA AAACGTACGA
    GCTGGCTCTG CAGTGCTTAG CTACAACTAA GAGGAACAGA CCAAGCATGA
    GGCGATGCGC TGAGATCCTA TGGAGCATAC GCAAAGATTT CAGGGAGTTG
    GATATACCAA CCGCATCCCT GAACTGAACT GAGACAGTTC ACTTGGAGCA
    ATCAAGAAAA GCTGCACTCC AGTTTGCCTC TCTTCAAAGC GTGGTGGTAT
    GAATCACCCG ATTGCTGGAT GATGAATTTA TTCCTTCAGG ATGTGGTCTA
    AGTAGTTGTG ATTGTGAACG GGACTGGTGA TCTTCCTAGG AATTGTGTGT
    TCACCAGCTA GCAACTAGGA ACAATTGCAT AGCATATTCT GTACATGATA
    AATTGTTGCT GTGAGCAAGA CAGACACAGA TACTATATAA TGGTATATTG
    GTTGAGGATG CAATTTTGTT GTGATTATTT AAAACTTCCA AAAGAACACA
    CAAAGTTATA TACAAAATCG TAACG

    Gene models with high sequence identity

    1. AT4G00330.1 [+] show detail - calmodulin-binding receptor-like cytoplasmic kinase 2
      E-value: 1e-107; Score: 387.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 8.6e-39
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.2e-24
    ProfileScan Protein kinase, catalytic domain 37.997
    Gene3D no description 5.1e-18
    Gene3D no description 1.1e-47
    HMMPanther WALL-ASSOCIATED KINASE 7.8e-153
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.8e-153
    superfamily Protein kinase-like domain 1.1e-76
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 6.4e-47

    See the detailed result >

    AT4G00330.1

    Model type
    Protein coding
    Short Description
    calmodulin-binding receptor-like cytoplasmic kinase 2
    Curator Summary
    high overall homology to CRCK1
    Computational Description
    calmodulin-binding receptor-like cytoplasmic kinase 2 (CRCK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calmodulin-binding receptor-like cytoplasmic kinase 1 (TAIR:AT5G58940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR