K24232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24232

Determination of introduced cDNA(s)

  • J023010O04 - Rice Full-length cDNAs - Original: J023010O04

    full reading [+] show sequence

    Nucleotide sequence: J023010O04 - full reading
    GATCCTCCTC TCCTCTTCTC GCTCTCACTT CTTGTGCCCA AGTGTGAGAG 
    CAATGGGAGT TCTTGGTAGT AGGGTCGCTT GGGCATGGCT GGTCCAGCTG
    CTGCTGCTCC AGCAGCTCGC CGGAGCGTCG CACGTCGTCT ACGACGACCT
    CGAGCTGCAG GCGGCTGCTA CCACAGCGGA CGGCGTGCCG CCGTCCATCG
    TCGACTCTGA GCTCCGGACT GGGTATCACT TCCAGCCACC CAAGAACTGG
    ATCAATGATC CGAACGCGCC GATGTACTAC AAGGGGTGGT ACCATCTGTT
    CTACCAGTAC AACCCCAAGG GCGCCGTGTG GGGGAACATC GTGTGGGCGC
    ACTCAGTGTC ACGTGACCTC ATCAACTGGG TGGCGCTCAA GCCGGCCATC
    GAGCCCAGCA TCAGGGCCGA CAAGTACGGC TGCTGGTCGG GGTCGGCGAC
    GATGATGGCC GACGGGACGC CGGTGATCAT GTACACCGGC GTCAACCGCC
    CCGACGTCAA CTACCAGGTG CAGAACGTGG CGCTGCCGAG GAACGGGTCG
    GACCCGCTGC TGCGCGAGTG GGTGAAGCCC GGCCACAACC CGGTGATCGT
    GCCCGAGGGC GGCATCAACG CGACGCAGTT CCGCGACCCG ACCACCGCGT
    GGCGCGGGGC CGACGGCCAC TGGCGGCTGC TCGTCGGCAG CCTCGCGGGG
    CAGTCCCGCG GCGTGGCGTA CGTGTACCGG AGCAGGGACT TCCGGCGGTG
    GACGCGCGCG GCGCAGCCGC TGCACTCGGC GCCCACGGGG ATGTGGGAGT
    GCCCGGACTT CTACCCGGTC ACCGCGGACG GCCGCCGCGA GGGCGTCGAC
    ACCTCGTCCG CCGTCGTCGA CGCCGCCGCC TCGGCGCGCG TCAAGTACGT
    GCTCAAGAAC AGCCTCGACC TGCGCCGGTA CGACTACTAC ACCGTCGGAA
    CGTACGACCG GAAGGCCGAG CGGTACGTGC CGGACGACCC CGCCGGCGAC
    GAGCACCACA TCCGCTACGA CTACGGCAAC TTCTACGCCT CCAAGACGTT
    CTACGACCCG GCGAAGCGCC GCCGCATCCT CTGGGGATGG GCCAACGAGT
    CCGACACCGC CGCCGACGAC GTGGCCAAGG GCTGGGCCGG AATCCAGGCG
    ATTCCGAGGA AAGTGTGGCT GGACCCAAGT GGGAAGCAAC TGTTGCAGTG
    GCCAATCGAG GAGGTCGAGA GGCTGAGAGG GAAGTGGCCG GTCATTCTCA
    AGGACAGGGT GGTCAAGCCA GGGGAACACG TCGAGGTGAC CGGGCTACAA
    ACTGCACAGG CTGACGTGGA GGTGAGCTTC GAGGTGGGGA GCCTGGAGGC
    GGCGGAGCGG CTGGACCCGG CGATGGCGTA CGACGCGCAG CGGCTGTGCA
    GCGCGCGGGG CGCCGACGCG AGGGGCGGCG TGGGGCCGTT CGGCCTGTGG
    GTGCTCGCGT CCGCGGGGCT GGAGGAGAAG ACCGCCGTGT TCTTCAGGGT
    GTTCAGGCCG GCGGCGCGCG GCGGCGGCGC CGGCAAGCCC GTCGTGCTCA
    TGTGCACCGA CCCCACCAAG TCATCGCGCA ACCCGAACAT GTACCAGCCG
    ACGTTTGCAG GGTTCGTTGA CACGGACATC ACCAACGGGA AGATATCTCT
    GAGGAGCCTG ATCGACAGGT CGGTTGTTGA GAGCTTCGGG GCTGGAGGAA
    AGGCGTGCAT CCTGTCGAGG GTGTACCCGT CGCTGGCCAT CGGCAAGAAC
    GCGCGCCTTT ACGTTTTCAA TAACGGGAAG GCGGAGATCA AGGTGTCGCA
    GCTCACCGCG TGGGAGATGA AGAAGCCGGT CATGATGAAT GGAGCCTAAA
    CAATATTTGA AATTGAGAGA GATAGATGCA ATGCATGATG AGAACTACCT
    TCAGTAGCTA GCTAGATTTT TGAGTTTCAG CGGAAAAGAA AAAACTGATT
    GCCCTTAATT ATGTGCTAAA TCATGCCCCC TTGTGTAAAA TGGTTTCAGT
    CACACGTGTC GTATGCATAT GTACCAAGGG GACAGTTTGA ATGCATGGAT
    GCCATTAGGA CTAATAAAGA TTGATGCTAG TATAACCCT

    Gene models with high sequence identity

    1. AT2G36190.1 [+] show detail - cell wall invertase 4
      E-value: 7e-172; Score: 601.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Arabinanase/levansucrase/invertase 5.2e-99
    superfamily Concanavalin A-like lectin/glucanase 0.000000064
    PatternScan Glycoside hydrolase, family 32, active site 0
    HMMPfam Glycosyl hydrolases family 32, N-terminal 3.4e-113
    HMMPfam Glycosyl hydrolase family 32, C-terminal 6e-19
    HMMSmart Glycoside hydrolase, family 32 7.6e-235

    See the detailed result >

    AT2G36190.1

    Model type
    Protein coding
    Short Description
    cell wall invertase 4
    Curator Summary
    cwINV4 appears to function as a cell wall-localized invertase (that can catalyze the hydrolysis of sucrose into fructose and glucose) based on the phenotype of cwinv4 mutants. cwINV4 transcripts are expressed at high levels in lateral and median nectaries and this enzyme plays an important role in nectar production.
    Computational Description
    cell wall invertase 4 (cwINV4); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cell wall invertase 2 (TAIR:AT3G52600.1); Has 4207 Blast hits to 4168 proteins in 1243 species: Archae - 18; Bacteria - 2607; Metazoa - 78; Fungi - 284; Plants - 1032; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR