K24243

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24243

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24243

Determination of introduced cDNA(s)

  • J023055B06 - Rice Full-length cDNAs - Original: J023055B06

    full reading [+] show sequence

    Nucleotide sequence: J023055B06 - full reading 
    TGCGGCCACG GCCCCTCTCC TCGGCGAGCA CGCCGCCGCC CGCGGCGGCG 
    GGATATCCCC TGTAGATGAC CACACGGTGA TCGTCTCAGC CGGCCCGGGA 
    CGACTTCCAC GGCGAGCCAG GTGAAGCGGA TCGCGTGTCA ACAAAAGTGC 
    ACATCTTGTG GAGCCAGAAA GTGCATTTGG TGGATAAAGC TTTTTTGCCA 
    GCTAGCCCCT GTATCAGTTA TAGATTGCTA ATATTTGCAT GTGAATGCAC 
    TGATTTTCTT GAGGCAAATG ACGTAATGAT GAAGCCTTGA TCCACAATCT 
    AGTGATGTGG CAGATAATGT AGACGACAGG AGAAACTATT GGATGGTTTT 
    TATTTATCAC AGCGGGGATA ATGACAGCTG GAATTTTTTA GCGTCTCCTG 
    GCAGCAGTCT CTCTCTGAGC ATTGAAGTAG ACAGCAGCGA CAGGAAGGCC 
    AAGTTCGTTC TCCTCAGCAA ACTGGCGTGT ATTGAAATGA TCCCTAGAGG 
    ATGGCACAAC TACAGCCTGC CTACGCTTCT GCTTGAAGAG CACAAAAACG 
    AACCTGTGGA TACCAATGCT GGGCTTTGGG CTCTCATAGC TTATGATTTC 
    CCGTCCTGCA ATTCAAATGC CAGAAAGATG CATATTAAGA ACAAATACAT 
    GCAAGCATGG AATGATCTAA TGCAGGTTAG GGAGAGGACC TACCAAAAGA 
    GGCATCCGTT GTTCCAGGTT ACTATCATCT TCGTACATGG GTTGAATGAA 
    TCAATAACTT CTCCGATCAC CCGCCCAACA ACAAGAGGCT CCACAGACCT 
    AGACATGGTT GGAGCCTTGG AGGGACAGAT GCACTCTACA CTGTCTGCGT 
    GGAAGCCTAT CAACCCCCAA ATGTTTGTCG TTAGCAGCCT TGTTTGTCTG 
    GACTAGCAGT GCACCTTTAG CTTGGTGTGC TGACTTGTCA CTAGTGGTCA 
    GGACAGGCGT GCAAGGTCAG CTGTGAGTTA TCATTGTATT TCTTAGACGA 
    ATATTTCTTC AGCTGTTTTG TAACAGACAG TGATGTTTTC TGTTTGCTGT 
    CAAAATTGTT ATTGGGTAAA AAGGAGACAC CCACTGAGCC AGAAGATGCA 
    CAATGAAGGT GAACAAACAG ATTTGCTGCT CAAATTCAGA GCACTTGGCA 
    GTTCGCACAA GTGAAAGAGG TTGTTGCTGG TTCAGGTAAT CAGGTCCCAG 
    TTTTGGGCCG TATATGAGCC CCTGACAAGT TGTCGACATC GATGAGAGAT 
    CTTTCCATTT CAGTTCTTCA AGCACTCTAC CCGCTTGGGA AACATCAGTC 
    TGGTTCAGTT TGCTGTCAAA ACTACCCATA TCAAAATTTA GTAATGCCAA 
    ACTTTGATAT TATTAAATTT CAGTTTTGTA TGTATTTGGT TTGTGCCCTC 
    ACCAAATTTT CAAGTGTTTT TATG

    Gene models with high sequence identity

    1. AT2G27550.1 [+] show detail - centroradialis
      E-value: 7e-23; Score: 22.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 9.5e-23
    superfamily Phosphatidylethanolamine-binding protein PEBP 5.3e-18
    Gene3D Phosphatidylethanolamine-binding protein PEBP 3.2e-20
    HMMPfam Phosphatidylethanolamine-binding protein PEBP 0.000013

    See the detailed result >

    AT2G27550.1

    Model type
    Protein coding
    Short Description
    centroradialis
    Curator Summary
    encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.
    Computational Description
    centroradialis (ATC); CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT5G03840.1); Has 2165 Blast hits to 2165 proteins in 308 species: Archae - 0; Bacteria - 2; Metazoa - 605; Fungi - 111; Plants - 1396; Viruses - 3; Other Eukaryotes - 48 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR