K24244

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24244

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24244

Determination of introduced cDNA(s)

  • J023109M13 - Rice Full-length cDNAs - Original: J023109M13

    full reading [+] show sequence

    Nucleotide sequence: J023109M13 - full reading 
    GGGCCGCAAT CACACGCACA CCCTTTACCC GCCGGAACGC GCGCACTTGC 
    CTTGCCCCCC CGCCAAACGC CAGCGACAAC AGCTATAGCA GCAGCCGCGA 
    GCCGCGAGGC CTTCTCCTCC CGGGACGCCG CGCGAATGCC CTCCCCTCGC 
    TGCCGGGGGG AAGAGGAGCG GTAGCAGCAG GCGAGGGCGC CGCGGCGGCG 
    GCGGGGATGG CGGGGCGGCC GGGGTACGTG ACGGTGCCGA TACTGTCCGT 
    GCTCGCCGCG ATCGGGTACG TGTACTACAC GGCGGTGTTC CTGGCGATCC 
    CGGCGTGGCT GGGGCTCGCC ACGGCGGCCG GGGTGGCCAA CGCGGTGGCC 
    TTCACCGCGC TGGCCGCCGC CTGCGTCGCG ACCTACGCCG TCGCCGTCTC 
    CCGCGACCCG GGCCGCGTGC CGCCGGCCTT CTTGCCCGAC GTCGAGGACG 
    CCGAGAGCCC CATCCACGAG ATCAAGCGCA AGGGTGGCGA TTTGAGATAT 
    TGTCAGAAAT GTTCCCATTA TAAGCCTCCC CGTGCTCATC ATTGTCGTGT 
    CTGCAAGAGA TGTGTTCTAA GAATGGACCA TCACTGTATA TGGATTAACA 
    ATTGTGTTGG ACATGAAAAC TACAAGATTT TCCTAGTCTT TGTGCTGTAT 
    GCTGTAGTAG CAAGCTTATA TTCACTGGTT CTGGTTATAG GAGGTGCTGT 
    GCACAGTTTG CCTAAGAATG AACAATTAGG CAGTGATTCT TCTAGAACAT 
    CAATTATCAT TTGCGGGGTA TTTTTGTGTC CACTAGCTTT GGCATTGTCC 
    ATTCTTTTGG GTTGGCATGT GTATCTCATC TTTCATAATA AAACTACTAT 
    TGAGTACCAT GAAGGAGTTA GGGCAATGTG GTTGGCAGAA AAGGCTGGAA 
    ATCTATACCA CCATCCCTAT GACCTTGGTG TCTATGAGAA TCTTGTTTCA 
    GTGCTAGGGC CTAATGCGTT GTGCTGGCTC TGCCCAATAT CAAGGAATAC 
    AGGCAATGGT ATTCGTTTCC GTACATCATA TGATATACCA CTATCTACAC 
    CACCAATTTG ACATCAGGTA GCATTACATT CATGTTAGAT TTCTGGTAAT 
    TTGCTAAAAA AACTTGGTTG CCTATCCAAG TGTGAAATGT GCTATTCTCG 
    CAATAGCATT TGATAACCCT TCATAAAGGA ATAGCGTTTG TCAATGTCTT 
    GAAACTCTTG CATCAAGAGT TTGTACTTGA TGTGATCAAA TGTGTAAATG 
    ACACTCCACG TGTAAGATAC AGGAAGAGGA GCTGGATATT CCTCCAGGCT 
    CCAAGGATCT ATATGGATTT TGGAGCTAGA AATGTTAACT TGGTTTTCTT 
    TTTGCTTTGC AATTTTCGAC ATACTTGATG AGAAGAGTCG CCAGCGCCTC 
    TACTGATCTA GAGTGGTTGT ATTCATACAC AGAAGTCCAA ATACATGAGT 
    GCCTCTTGTA AAGTTC

    Gene models with high sequence identity

    1. AT3G09320.1 [+] show detail - DHHC-type zinc finger family protein
      E-value: 9e-83; Score: 304.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, DHHC-type 28.764
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 1.4e-51
    HMMPfam Zinc finger, DHHC-type 1.3e-26

    See the detailed result >

    AT3G09320.1

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G04270.1); Has 5137 Blast hits to 5129 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2212; Fungi - 755; Plants - 839; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR