K24250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24250

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24250

Determination of introduced cDNA(s)

  • J023027C14 - Rice Full-length cDNAs - Original: J023027C14

    full reading [+] show sequence

    Nucleotide sequence: J023027C14 - full reading 
    GCTCCTCCTC CTCCTGGATT GCCGCCGCCG CCCACGGTTT CCAGCAATCG 
    CCGCGGTTCG CGCCGCCGCC GCCGAGCGGA GCAGCGCCCC GATCGATCCC 
    CTTCCCCTCC CGCGAGCAAC CGACGCCGGC GGAAGTCCCA GCTGCTTCCG 
    CCACTTCGCC CGGTGAAGCA TCCGTACTCA CGCTCATCCT CTTCCTCATC 
    TCTCTTTGCG GTCTTTACTA CCCACTACGC CTAACCCCCT TTTCTTTTTT 
    CTTCTCGGAT TTCGTTAGCC TTAGCTTCTC TTCCAGATCC GCAAGCAATT 
    TTCCTGAATT GGACCTAACC AGAGTAAGAG TAGCAGTTTG TTAGGATTGG 
    ATTGGGAGTG TTAGCCCCTG ATTAGTTGAC AGGAGTAGAT TAATAGTGTA 
    CCTCCGTTGA ACTTGTGATG AACTTTGCTA ATATATGCCA AAGTGGCTTG 
    TCGTGATTGG GTTAGTTATG AGTATCTACT GTGCCATGAT TAGATTAGAT 
    GCGTGTCCAG ATTGCTGCCA TCTACTGGGA TTAATGTTTG AGTGAGTTTT 
    GTTTTTTTTG TTTTTTGTGT AGAAATGGAT CGACCTGATG AAACCGTGAA 
    ATTCCCAAGC TGTGATGCGT ATTTTGACAC TATACAGTCC AAGAAGAAGC 
    TGCCCCTCTC TTTGCAAGAA TCGCTCACTG CTGCCTTTGC TCAGATTCCT 
    GTCTCGTCTT TTCCTGATGT TCCTAATGGC CGAGTGATTG AAATTCCAGG 
    AGACACTTCC GTTCTTGACG CTGTGAGAAT TCTCTCCAAA CACAACATTA 
    GGGCAGCGCC AGTGCTAAAT CCGGAATGTG GAGCTCCGGC TGATTGGAAA 
    GGGAGGTACC TTGGCATCAT TGATTACTCG GCTATCATCC TCTGGGTTCT 
    AGAAAATGCT GAGATTGCCG CCGTTGCTCT ATCAGCTGGG TCAGCAACCG 
    CAGCAGGAGT TGGAATGGGT GCTGTCGGTG CAGTGGGAGT GGCAGCATTG 
    GGTGCAACTG GTCCTGCAGC TGTTGCTGGC TTGACTGCCG CTGCAGTAGG 
    GGCTGCTGTT GCTGGTGGGT TAACAGCAGA AAAGGGTGTG GCAAAGGATG 
    GACTAACTGC TGCTGATCAT TTAGGAGAAG ATTTCTACAA AGTTCTGCTT 
    CAGCAAGAAC CTTTCAAATC AACTACAGTA TGCATTTTAC TCTATGATGA 
    ATTATTATGC ATATTTGGAT TTTTTTTTCC TTTTTGTTAA ATGTCGATCA 
    TTTATAGAGT CCAGTCAGTC TCAAATTATT TGGTATATAT TTTACCTTGA 
    ACCACTGTTC TGCTGTGTGG CTACACCGAA GTTTGGCTAT CCTAGTTACA 
    ATATATGCCG CAGCTTGGCG TGATTGAAAA CTTCCTGTGA TTTCTTAGCT 
    GCAACTTATT GTTGCTAATA ATAGTTTGGA TATCTGTCCT CTTTGCCTCA 
    TTTGAATATT GCATGATGAT CTTCTGATGT AAATCCTGCT AACCTTCATA 
    TTTTTTTCTC ATTATTATAG GTTCGATCAA TTGTAGAATC CTACCGCTGG 
    TCTCCTTTTG TCCCCATTAC ACTGGACACT TCAATGCTTA CTGTATTACT 
    GTTGCTATCC AAGTACAGGT TAAGGAATGT CCCAGTGATT GAGCCTGATA 
    AGCCAATTAT TAAGAACTTC ATTACTCAGA CTGGTGTTGT TAAAGGACTT 
    CAGCAGTGCA AAGGAAGGGA TTGGTTTGAT TATATTTCAG CGCTCCCTCT 
    CTCGGACTTG GGACTTCCAT TTATGTCACT TGATGAGGTT ATCACTGTTA 
    ACAGTGGTGA TCTAATCTTG GAAGCTTTTA AGTGCATGAA GGACAACAAA 
    ATTGGTGGTG TGCCTGTAGT AGAAGGTCCC AACAAAAAAC TTGTTGGCAG 
    TGTGAGCATA AGGGATATTC GCTTTTTGTT ACTTAGGCCT GACTTGTTTT 
    CGAATTTCAG GCAACTTACT GTCATGGAGT TCATGAAGAC CATAGGTTCC 
    ACCGTTTCTG ATTCAGGGAA CGGCCTGGTG AAGCCACCTC TCACCTGTTC 
    GCCTGACGCT TCTCTTGGCA GCGTGATTGA CAGCATTGCA TCAAGAATAA 
    CCCACCGGAT ATACGTCGTG GACGGTGACT TCGAGGTTGT TGGTGTCGTG 
    ACACTGCGAG ACGTGATCTC TTGCTTTATC TATGAGCCAC CTGGTTACTG 
    TGACAACTAT TTGGCATCAG CCATGGATAA GCTTGAGGAG AAAGGTGCAG 
    GTTCTGTGGA CACAAGTTGA GCCTTTTTCT GTAACGCGAA CACCAAAATA 
    ACAGACTGAA TTAGGGAGCA GTAGCAACTC TGATGTATTC AGGTTTAATT 
    TGTGGTGTTG CTGCAGTGAA AGTGTGTAGA ACAAGAGTGA TGCTGTTGCT 
    CCATGGTCTC TTAATGTAGT TTGCTTGGTG TTACTAAATT ACTATATAGG 
    GAGAAGTCAA TATACCCTCA GTAAAAGTCC ATCTAACACC TCATACTTTG 
    AAGTCGGATA ACCG

    Gene models with high sequence identity

    1. AT1G69800.2 [+] show detail - Cystathionine beta-synthase (CBS) protein
      E-value: 8e-71; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Cystathionine beta-synthase, core 0.0017
    HMMSmart Cystathionine beta-synthase, core 9.9
    HMMSmart Cystathionine beta-synthase, core 4.3e-08
    HMMSmart Cystathionine beta-synthase, core 8.3e-08
    superfamily CBS-domain 3.9e-06
    superfamily CBS-domain 3.4e-10
    superfamily CBS-domain 5.4e-08
    superfamily CBS-domain 0.0053
    HMMPfam Cystathionine beta-synthase, core 7.7e-10
    HMMPfam Cystathionine beta-synthase, core 6.6e-10
    HMMPfam Cystathionine beta-synthase, core 9.8e-09
    ProfileScan Cystathionine beta-synthase, core 10.587
    ProfileScan Cystathionine beta-synthase, core 12.137
    ProfileScan Cystathionine beta-synthase, core 7.501
    ProfileScan Cystathionine beta-synthase, core 11.358
    HMMPanther AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATOR 8.3e-53

    See the detailed result >

    AT1G69800.2

    Model type
    Protein coding
    Short Description
    Cystathionine beta-synthase (CBS) protein
    Computational Description
    Cystathionine beta-synthase (CBS) protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: SNF1-related protein kinase regulatory subunit gamma 1 (TAIR:AT3G48530.1); Has 884 Blast hits to 801 proteins in 238 species: Archae - 117; Bacteria - 172; Metazoa - 187; Fungi - 63; Plants - 180; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR