K24303

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24303

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24303

Determination of introduced cDNA(s)

  • J023069I01 - Rice Full-length cDNAs - Original: J023069I01

    full reading [+] show sequence

    Nucleotide sequence: J023069I01 - full reading 
    GGACCGTTTC TTCGCCGACA AGAAGAAGAA GGCTCCCCGC GGCTGCGGCG 
    GCGGCGGCGA CCAGCCCTTC CCCTTCTCCT GCTTCGACAG TTCGCCGCCA 
    TGGCCACTCG GTTTCTGCCT CTGGTGCGCC GCGGCCTTGC CGGCGTCCTG 
    AATCAATCGC CCGCGCCCGC GTCCACCCGA GGATTCTTGT TTCCTGCACC 
    TGTGACTGCT GGCATAAGAT CTCTGCAAAC TATCATGGAA GCAAGCAATA 
    ATGCTTCAGA TGACCGTAAC CAGGACATAG AGGATTCCAA AACCGACACC 
    GTGCCAGCTA CGGTCCCTTC ATCGGATTCC GGCTTCAAAG TTAGAGATAC 
    ATCAAACTTG AAGATCTCAC CGAGACACGA CCTCGCCATG ATCTTTACGT 
    GCAAGGTTTG CGAGACCAGG TCTATGAAGA TGGCGAGCAA GGAATCATAT 
    GAGAAAGGAG TGGTGGTCGC TCGTTGCGGC GGCTGCAATA ATTTCCACCT 
    GATCGCGGAT AGGCTTGGCT GGTTTGGGGA GCCAGGAAGC ATCGAAGACT 
    TTCTAGCCGA ACAAGGAGAG GAGGTGAAGA AAGGCTCAAC AGATACTCTT 
    AACTTCACTC TTGAGGACTT GGTTGGGTCT CAGGCTAATG ATAAGGGCCC 
    TTCTGATAAA AAATAGATTT CTCTTCAGTA TGGCTTTGGG TCAAGACAAC 
    TTAAAAAAGG TTAACTCCTA AGGAAATCCA CAAGTTTTTT ACTCGATATC 
    ATGACTTCTC AAGGTGGAGT AGTCCAACTT TTTGCACTTG TTAGTTCTGA 
    TGTTATTGCA GTGTAATTGT CAATTCTCAA CCTTGTGGCT AAGTCCACCG 
    TGTGGCTTTG GTAAATTTAT TGTAGTGGAC ACGACCCGAT TATGTACTAG 
    GCTGAGTGTC ATAGTTTTGT GATGTTCTTG ACAAAAGTAA CAAAACTAAT 
    TATGGAAATG TTTCCCTTTG

    Gene models with high sequence identity

    1. AT3G54826.1 [+] show detail - Zim17-type zinc finger protein
      E-value: 4e-41; Score: 165.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 3.1e-27
    HMMPanther Zinc finger, Zim17-type 3.1e-27
    HMMPfam Zinc finger, Zim17-type 1.9e-26

    See the detailed result >

    AT3G54826.1

    Model type
    Protein coding
    Short Description
    Zim17-type zinc finger protein
    Computational Description
    Zim17-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); Has 403 Blast hits to 403 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 127; Plants - 101; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR