K24308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24308

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24308

Determination of introduced cDNA(s)

J033046K19 - Rice Full-length cDNAs - Original: J033046K19

full reading [+] show sequence

GGCAGCCGCC AGCGGGTCAA CGAGCGAAGA CGAAGGTGAC AGGGCAAGCA 
TAGCAGTGAG GTAGCTAACC CTAGCGGGGG CGCGCGGGAG CGCGCCGCAT 
TGTTCCTGAG AGCTAGCCAG AAGGCCAACG GCGGTCGATC GTTGTCTCGG 
TGAGCCTGTT AGGCGCCGTT GGAGGAGATT GAAATCAAGA GAGCAAGGAT 
CCAAGCCAGC ATCTCAGATT GAAGGAAAGG AGATGGAGTC TCTCCCTGTG 
CCGAGTGTTC AGTCAATGGT GGCGGCTGAC GGTGGTGCCC ATGTGCCACC 
CAGGTACATC CGCCCGAGAG ACGAGGCAGT TGCTACTGAT GGAGAGACAG 
AGATCCCTGT CATTGACTTC CAGAGGCTGC AACTCGGCCA TGACGAGGAG 
ATGGCACGTC TTGACAGGGC CTGCCAGGAC TGGGGCTTTT TCCAGCTAAT 
AAATCACAGC GTCCCAGAAG ATGTGGTTGA TGGGATGAAG GCCAACGCCC 
GGGGATTCTT TGAGCTGCCA GCGGAAACCA AGAAGCAGTT TGCTCAGGAG 
CGAGGGCAGC TTGATGGTTA TGGCCAGCTG TTTGTTGTCT CGGAAGATCA 
GAAGCTCGAC TGGGCTGACA TTCTCTTCCT CAATACGCTG CCAGTGCAGA 
ACAGGAATTT CAGATTCTGG CCTAACCAAC TTGCTAAATT CAGATCGGCA 
CTGGACAAAT ACTCTGCTGC TGTGAAGAGC ATAGTGGATT TCCTCTTGGT 
TACAGTGGCG AACAACTTGG GAGTGGATCC AGAGGTGATT GCGAACAAAT 
GTGGCACTGA TGGGATCCAG GCGGTGAGGA TGAACTACTA CCCTCCGTGT 
GTTCAGGCGG ACAAAGTCAT CGGCTTCTCT CCTCACTCTG ACTCTGATCT 
ATTGACCCTT GTCCTCCAAG TGAATGAGGT GGATGGCCTG CAGATCAAGA 
GAAACGAGAC CTGGTTTCCT GTTAGGCCTT TGGAAGGCGC TTTCATTGTC 
AACGTGGGAG ACATTCTTCA GATATTCACA AACGGGAGGT ACAAAAGTGC 
TGAGCACCGA GCTGTTGTCG ACATGAAGAA AGAGCGGCTG TCTATAGCAG 
CCTTCCATTC TCCAAGTGTC CATGCTGTCA TTGGTCCTCT GAAGGAGATG 
GTGGCGCATG AACATGAGGC TGTTTACAGG AGCATAGGCC ATGATGAGTT 
TATGAAGCTC TTCTTCTCCT CCAAGCTGGA GGGGAAGAGC TTCTTGGACA 
GGATGAAGAA GCTCTAAATC AAAGCTGAGA GTAAGATCAG TGACAGAGAA 
TCAGATCGAG TGATCGACAA GCATCCTGTT GTGCTTGCTG GCATTCGATG 
AGGTATTGGA CTTGAGGGCA AAGGATGCAA GGGGTCCAAC TCCAAGGTAA 
GTACTTAGAA CCCATTGTAG TCTCTATTCA TATCATTGTA TCATCCTTGA 
GAGAGTACGT AGAACCCATT GTAGCCATCC GTGTGCTTGT TGAAATGGCT 
GCAACTCTGT AACAGTGGAA GATTCAGGCA CACAAAAATT TCAGACAAAT 
GTTCGTAAGA TATCTGTAGG GATCAGATAG AATTGTTGAT GGTCTTCAGA 
TTGTTTTTTT TATGGCCAAT GATATTCATA CCTCAAATAT ATTTGATATG 
ACCTAAATCA AATTAAAACT C

Gene models with high sequence identity

AT1G17010.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
E-value: 3e-87; Score: 319.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oxoglutarate/iron-dependent oxygenase	1.3e-24
HMMPanther	ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE	4.9e-143
HMMPanther	IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL	4.9e-143
Gene3D	no description	8.2e-97
superfamily	Clavaminate synthase-like	9.8e-96

See the detailed result >

AT1G17010.1

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1); Has 8317 Blast hits to 8272 proteins in 989 species: Archae - 0; Bacteria - 1073; Metazoa - 106; Fungi - 910; Plants - 4938; Viruses - 0; Other Eukaryotes - 1290 (source: NCBI BLink).
Link: InterPro Scan - TAIR