K24318

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24318

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24318

Determination of introduced cDNA(s)

  • J033094K08 - Rice Full-length cDNAs - Original: J033094K08

    full reading [+] show sequence

    Nucleotide sequence: J033094K08 - full reading 
    CCCCTTGACC CCTTCCTCTC GTCGTCGTCG GTGCGGCGCC GCCAGGGAAA 
    ATGGAGTCAT CGAGGCTGCG GAGGCGGCGG CGCTGCCGCG TCCGGTGCCT 
    CCTCGCTCCT CCCGTTGCCG CCCGTGCGCA GCAGCTGCAG CGCGTCGCAT 
    ATTTCTCCAA ACCCACGCAG ATCTCCGCTT TTTCCCGGCG GCAACCACGC 
    CGCGGCAAGC AGTTCTAGTT ATAAGCCTGT GCAGAATATG CAGAAGAAAG 
    AAGTACAAGA TACACGACGC AGGAGATTTG CAGCAGGAAA ACATGTTCTC 
    TGTCTTAAAC TTTGATGGTG GAAATGCATA CGAGCAAATT ATTGAAGCGA 
    CGGAGAACTT TAGTGAAAAA TATTGCATTG GAGCAGGTGG TTATGCGTCT 
    GTCTATGTAG CTAAATTATC AAATGGTAAA AATTTTGCAG TCAAGAAGAT 
    AAATGCAACA GAGAATGGCC GTTTGATAAA CGAGCAAATG TTCTATCGTG 
    AAATAGAGGC CACAATGCAA ATACGCCACA AGAACATTGT AAAAGTCTTT 
    GGCTACTGCT GTACAGCACG AGATAAGTTT ATTGTCTACA AGTATATGAA 
    AGGAGGAAAC TTGTTGACAG CTCTCAAGTC CTACAGAAGT GCAAGCGAGT 
    TGGATTGGAA GCGCAGGTTA TGTATTGCTC AGGATGTTGC TCATGCCCTA 
    TCTTACTTGC ATCACGACTG TTCAGATCCT ATAGTCCATC GAGATGTAAC 
    AACCAAAAAC ATTCTGCTAG ATCTGGAGTT CAGAGCTTGT TTATCAGACT 
    TTGGGATAGC TAAAATACTG GATGCTGATG GATCAGGACA CACAAGGCTC 
    GCTGGTACAA AAGGATATCT TGCACCAGAG CTGGCATACA CTACGAAGGT 
    GACAGAGAAA TGTGACGTTT ATAGCTTCGG GGTGGTAGTT CTTGAGCTGT 
    TGATGGGATC TCACCCTGGA GACTTTGTTT CGTCGATCTC ATGCCCTAGC 
    AAGAAAAGCA CACCGATGAA GGATTTGTTG GACACCAGAC TCCCGCCTCC 
    AGCAGGTGAA GTTGCAAGCG AGATATTTGG ATTGATCACG GTTGCTATAC 
    AGTGCCTTCA CCCCAATCCA TCAACTCGTC CGACGATGCC ATCCGCAATT 
    CATTTGTTCT CCAAGTTTTC TAGGGCGGTT GATCTTGATT ATCTGCATGC 
    TGACATCATG GAGTTCTGCC TTCTTTGAAC CTTGACCTTT GTATTCATTT 
    TCTACTTGTG GAATGTTCCC GAGGATAAAG GGAACTACAC AGGTATTCTA 
    CATCTTATGC CTTTGTTGAT GTGGGAAGGA AGGGAGCTAA TAGGTGTGTT 
    GTTTTACAAG AATTGCTATC

    Gene models with high sequence identity

    1. AT4G08850.1 [+] show detail - Leucine-rich repeat receptor-like protein kinase family protein
      E-value: 6e-78; Score: 288.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN SERINE/THREONINE KINASE-RELATED 5.5e-84
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.5e-84
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Tyrosine-protein kinase, active site 0
    ProfileScan Protein kinase, catalytic domain 37.22
    HMMPfam Serine/threonine-protein kinase-like domain 6e-47
    Gene3D no description 4.8e-15
    Gene3D no description 2.8e-45
    HMMSmart Serine/threonine-protein kinase domain 6e-37
    HMMSmart Tyrosine-protein kinase, catalytic domain 9e-18
    superfamily Protein kinase-like domain 1.1e-70

    See the detailed result >

    AT4G08850.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat receptor-like protein kinase family protein
    Computational Description
    Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT1G35710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR