K24337

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24337

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24337

Determination of introduced cDNA(s)

  • J023018H21 - Rice Full-length cDNAs - Original: J023018H21

    full reading [+] show sequence

    Nucleotide sequence: J023018H21 - full reading 
    GGCCGTTCCT CAGTGGCCAC CTAACCCAAC TACCTTGAAG GACACACACT 
    CCACAGTGGA GGAGGCCAAG GATTTGCTAG GCTAGGACCA CACTTGCCGT 
    TCCTAGGTAC CTCATTGTTT TTGATGATAT CTGGAGTACA AAAATGTGGG 
    AGAATCTGAT GTCAGTTCTA CCTAGAAACA ACAAGAAAAG CAGAGTAATT 
    ACTACAACTC GCATGTCCAA TGTTGCGAGC TCACGTTCTC CCCGGTCCAA 
    TGGTCATATC TATGAAATGG AATCTTTAAA TGATGCTGAC TCCAAAGAGT 
    TATTTTCTAA AATCATTTTT GACCACAAGG GTAAATGTCC AAAGGCATTG 
    GACGAAATAG CCGATGAAAT TTTGAAAAAG TGTGGTGGCA TACCGTTGGC 
    CATAATTACG TTAGCTAGTT TGCTTGCTAA AAAACCAAAA ACAAGGAAAG 
    AGTGGAAGAG AGTGAAAAGT TCTATTGGCA ATGCATGTGA ACTAGAAGGG 
    ATGAGACAGA CATTATCCCT TAGCTTTTAT GACCTGTCTT ATGATCTTAG 
    AAACTGTTTC CTATCATTTA GCTCCTTCCC AGAGGATTAT GAAATTGATA 
    GAGAGAGATT GGTACTGAGA TGGATTGCTG AAGGATTCAT TTCGGGGAAA 
    GAACAACAGG AATTAATGGA GGAAGAAGGA AACAACTACT TTAATGAGCT 
    AGTTAATAGG AGTCTGATTC AGCCAATTGA TATTCAATAT AATGGTTCTG 
    CACGAGCTTG TCGAGTCCAT GATCTGATGC TTGAGCTTAT AGTGTCCCTG 
    TCAAAAGAAG AGAATTTTAT CACTACATTG AATGGACCGG AGTGTCTACC 
    TATGCCGAGC AAAATTCGAT GGTTATCTCT CCATTCCAAC GAAAATGAAG 
    TAATGCAGGT GGTCACAAAT AATCGTCGCC ATGTTCGGTC TGTGAGTTTC 
    TTCCCGCCTG TTGCACAGTT GCCTCCTTTT GTTGAATTCC AAGCTATGCG 
    GGTTTTTGAT GTAAAAGGCT GTCAGTTTGG GGAGCACAAA AAAATGAAAA 
    ACATGGAAAG TTTAATTCAG TTGAAGTATC TGAATTTGGC ATATACCAAT 
    GTGACAGAAC TTCCAAAAGA AATTGGGGAG GTTCATTTCT TAGAGACTCT 
    TGATGTTAGA AATTGTCAAA TACAAAGTTT ACCACCATCA TTATGCCAAC 
    TGCAGAAGTT GGTGCGACTT TTTGTCAGCC TTGGAGTCAC ATTGCCAGAT 
    AAGATTGGGA AGATGCAAGC ATTGGAGGAG CTATCACATG TTGCCATCTT 
    ATGCAACTCT TTGAATTTTG TGAAGGCACT AGGGGAGCTG ACCAAACTGA 
    GAGTGTTCCG AGTAGATTGC CGGTATTCAT GGCTTAACGG GAAGAAACAA 
    GCCCCAAGGC AATCAGTCAG CACGCATGAA GATGTTTTGT TGTCATCTCT 
    GCAAAATTTG TTAAAAAAGA AGAATCTTCG ATCACTAGAG ATCGACCTTA 
    CAAATGGTTC TTCCTTGGTG TTTTCATTGA TGAATCCATA CTGTCCTCTT 
    CCCCAACTCG AAGAACTTGT CATTTCCAAT TCCATTTCCA GAGTTCCAAG 
    GAGCATGAGA TCGCTGAAGG ACGTTATCCA TTTGGAAATC AAGCTTGATA 
    GGATGGAAGA AGAAGATCTC CATATCATCA GAGACATGTC TCATTCACTG 
    CTTTTTCTAA AAATCCACTT GGAAATAACC CCAGAAGAGA GGCTTATCAT 
    TGACTCCGAG GGATTTGAGT GTCTGAAGCA ATTTGAGTTT TGCTGTGTTG 
    GAATGGGGCT GAAATTTGTG CAAGGGGCTA TGCCAGATCT CGAGAAGCTT 
    GATCTTGATA TTGGGGTTCG AAAGACCATG TCCAAGTATG GCGGTTTCGA 
    CTTTGGCATC AAGAATCTTG AAGCACTCAA ACATGTTGGT GTCAAACTTG 
    ATTGTCAATA TGCTGAAAAT CGGGAGATCC AGTCTGCAGA GGCTACTATC 
    AGGAGTGGAG TCCTTCCAAG ACGTATAATG CCACAAATTC AAAGGATTGG 
    TGTGAACAGA TGAACTTTCT TCCAGAAATA GTTGAATGCT ACTGCTTTGG 
    TATTTGCAGG GAACTCATTG GATTCGATTC TAGGCCCTAT TGTGAAAGTG 
    TGATGAGAGA CAAATAACAG ATGCAACACA CATCGTTATT TATGGATGAT 
    GGTTATGCAA CTCTTTGTTA ATCATCATAT ATGAAAATTT AGCTGCTTTT 
    AATAATGTCA TGTCATCT

    Gene models with high sequence identity

    1. AT1G53350.1 [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
      E-value: 1e-39; Score: 162.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NB-ARC 2.1e-44
    HMMPfam Leucine-rich repeat 0.012
    HMMPanther LEUCINE-RICH REPEAT CONTAINING PROTEIN 8.9e-11
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8.9e-11
    superfamily L domain-like 3.7e-25
    superfamily P-loop containing nucleoside triphosphate hyd 6.2e-10
    Gene3D no description 1.7e-07
    FPrintScan Disease resistance protein 4.8e-06
    FPrintScan Disease resistance protein 4.8e-06
    FPrintScan Disease resistance protein 4.8e-06

    See the detailed result >

    AT1G53350.1

    Model type
    Protein coding
    Short Description
    Disease resistance protein (CC-NBS-LRR class) family
    Computational Description
    Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 15992 Blast hits to 14913 proteins in 520 species: Archae - 9; Bacteria - 880; Metazoa - 731; Fungi - 25; Plants - 14197; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR