K24339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24339

Determination of introduced cDNA(s)

  • J033079F10 - Rice Full-length cDNAs - Original: J033079F10

    full reading [+] show sequence

    Nucleotide sequence: J033079F10 - full reading 
    GACATCCCTC ACAGCCACAG CCATAGACCA TAGTACTACA CCACATCTTC 
    TCCCCTACCC ACCAGCAGTT CCCAGCCATG TCTGCTAGCA AGCTGCAATT 
    CACCCCATGC AGCACACCCA TTCAGGGCAA TGAGATCAAC TTTAGCAAAC 
    TCTACCTGCA CCACACGCCG GCTGGTCCAA GACCAAACCA GTCCGGGGTC 
    ACAAGCACAA ACAAGGAAAC CGGGTTGGGT TCCTTGGTTG TTAACAACTG 
    GCAGGTATAC GACGGAATCG GCTGTGACGC CAAGGTTGTT GCCCATGCAC 
    AAGGCCTGCA CGTTTATGCC GGTAACTGGC ACAACTCCTT CACCCTAGTG 
    TTTGAGGATG AAAGGTTCAA GGGTTCCACT CTTGAGGTGA TGGGAATAGT 
    TGTTGAACAA GGTGAATGGG CTATTGTCGG GGGCACGGGA CAATTTGCTA 
    TGGCAAATGG TGTAATCTTT AAAAGGTTCC ATGAACAAAA AAAAGAAGGA 
    AATATTATGG AACTCACTAT CAAGGGATTT TGCCCTGTCT TGAAAGGGTC 
    ACCGTCACAG GGCCTTGTCA CCAAGATTGG GCCTTGGGGT GGAATTGATG 
    GAGGCAGAGC TCAAGACATT ACAGCTACTC CAAAGCGTCT AGAATCCATT 
    ACAATACACA GCGGCTGGAC TATTGATTCG ATCTCATTTA TTTACTTTGA 
    CCAAGCTGGA GAGAAGCACA GAGCAGGTCC ATGGGGTGGT CCTGGTGGGG 
    ATCCTTGCAC GATTGAATTT GGCAGTTCAG AGTTTCTCAA GGAGGTTTCT 
    GGAACGTTTG GCCCATATGA AGGCTGGAAA GTTATAAGAT CTATTAAATT 
    TGTCACCAAT AAGAAAACAT ATGGTCCATT TGGACGACAG GAAGGAACCC 
    CTTTTAGCGT CCCGGTGCAG AATAACTCCA CTATAGTGGG CTTCTTTGGA 
    CGCAGCGGGA AGTACCTCGA CATAGTTGGC ATCTACGTGC ATCCGAGATA 
    ACATGTCAAA ATCAGTTTCC CATGTTTGAC TTTGAAGTGT GTTTTCTATA 
    ATAAATAAAT ATGATGGGAT CCTCCCTTTC ATTCCAGTAG TGATGAGGGA 
    TCCTTTCTAG CTGAAGTGTG TTTACTTCTG AATTTGCAGT CCTTCTGTCG 
    GTGGTTTCAG TTTGCAATGC ATTGTATGCA TCAATAAGGA TCTTCGTTGA 
    AGGTTGGTTT GGTGAATAAA GTCGTCATTC AGTTAGC

    Gene models with high sequence identity

    1. AT1G19715.3 [+] show detail - Mannose-binding lectin superfamily protein
      E-value: 5e-18; Score: 89.40

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mannose-binding lectin 1.5e-41
    Gene3D Mannose-binding lectin 4.4e-43
    HMMPfam Plant disease resistance response protein 2e-34
    HMMPfam Mannose-binding lectin 4.2e-29

    See the detailed result >

    AT1G19715.3

    Model type
    Protein coding
    Short Description
    Mannose-binding lectin superfamily protein
    Computational Description
    Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1).
    Link
    InterPro Scan - TAIR