K24406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24406

Determination of introduced cDNA(s)

  • J033093E13 - Rice Full-length cDNAs - Original: J033093E13

    full reading [+] show sequence

    Nucleotide sequence: J033093E13 - full reading 
    GACTTTTGTC ATCTCGGCGG CGGCGCGGCG CGGAGCAGAG GAGGACGAAG 
    CAGCAGGCGG CGGCGGCAGA GCACGGCGAC CTAGCCCGAC CTCGCAACCA 
    TGGCAAGGGG TTTGAAGAAG CATCTGAAGA GGCTCAATGC GCCCAAGCAT 
    TGGATGCTCG ACAAGCTTGG TGGAGCTTTT GCCCCCAAGC CATCTTCTGG 
    TCCTCACAAG TCCAGGGAGT GCCTGCCTCT GATCCTCATT ATCAGGAACA 
    GGCTCAAGTA TGCTCTGACA TACCGTGAGG TTATTTCTAT CCTCATGCAG 
    CGCCATGTCT TGGTTGATGG CAAGGTCAGG ACTGACAAGA CCTACCCAGC 
    TGGTTTCATG GATGTCATTT CCATCCCCAA GACTGGTGAG AACTACAGGC 
    TTCTGTACGA CACCAAGGGA CGTTTCCGCC TTCAGTCTGT CAAGGATGAG 
    GATGCTAAGT TCAAGCTTTG CAAGGTTCGG TCTGTGCAGT TTGGCCAGAA 
    GGGAATCCCC TACCTGAACA CCTATGATGG TCGCACCATC CGCTACCCTG 
    ACCCGATCAT CAAGGCAAAC GACACAATCA AGATCGATCT GGAGACCAAC 
    AAGATTGTCG ACTTCATCAA GTTTGATGTT GGCAATGTTG TCATGGTGAC 
    TGGAGGAAGG AACACAGGCC GTGTTGGTGT GATCAAGAAC AGGGAGAAGC 
    ATAAAGGCAG CTTCGAGACC ATCCACGTTG AGGATGCCCT GGGCCACCAA 
    TTCGCCACCC GTCTGGGCAA TGTGTTCACC ATTGGCAAGG GCAACAAGCC 
    TTGGGTGAGC CTGCCCAAGG GCAAGGGCAT CAAGCTCAGC ATCATCGAGG 
    AGCAAAGGAA GCGGGATGCT GCCGCCCAGG CTGCTGCCAA CGCTTAAAAT 
    CTGCTGCTGC GTCTGCCTGG AGTTTTGCTA TAGCGAGTTG TTTGCAAGGA 
    TATAGAACTA TCTGCCCCAG ACTATCCTTT TTTGAGCTCT TTTGCCTAAT 
    GTTATGTTGA TCAATTCGCG AACTCATGTT TGCTGCTAGC TGTAATGCGA 
    CTGTTTACCT TATTTAAGGC GCCTTTTAAG AACCTCCAAA CCAAATTGTC 
    TTTGCCTGTT GCTGAGATGG TATGGTTTTG AGCATTCAGC CTATGGCCTT 
    TTTGTTC

    Gene models with high sequence identity

    1. AT5G58420.1 [+] show detail - Ribosomal protein S4 (RPS4A) family protein
      E-value: 4e-125; Score: 444.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S4e, central 2.1e-30
    HMMPfam Ribosomal protein S4e, N-terminal 8.4e-20
    HMMPfam KOW 4.5e-07
    HMMPfam RNA-binding S4 5.5e-07
    HMMPIR Ribosomal protein S4e 1.6e-132
    PatternScan Ribosomal protein S4e, N-terminal, conserved site 0
    BlastProDom Ribosomal protein S4e, central 2e-46
    HMMPanther Ribosomal protein S4e 2.3e-196
    ProfileScan RNA-binding S4 9.089
    HMMSmart RNA-binding S4 0.00014
    HMMSmart KOW 0.0017

    See the detailed result >

    AT5G58420.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S4 (RPS4A) family protein
    Computational Description
    Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR