K24435

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24435

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24435

Determination of introduced cDNA(s)

  • J023061C04 - Rice Full-length cDNAs - Original: J023061C04

    full reading [+] show sequence

    Nucleotide sequence: J023061C04 - full reading 
    GGCTTCTCCT CCCACTCTCC CCCTCTCTCT CCTCTCTCCT CTCTCCTCCC 
    CCCGAGATCC GCTCCGGCCA CCCGCCGGCG AGGCCGCCCC CCGCCCCGCC 
    CGCCTTGCGA TCTTGGGACA GTGCGGCGCG TCCCGGAACG CCGGTTCTTG 
    GCCGGTCGAG GTGGTGGTGG TGGTGATAAA CGGTGCGGTG TCTGAGGAGT 
    GGGCGGTTGC TGCCGTGCCC GGAGGAGCTA GGAGGCGGCG GCGGGAGAGC 
    ACTGTTCTTG GAGGCTGCTT TTGAGGTGGG GTGGGGGGGA GGCGTTCGTT 
    CGCCGCCGGC GCCGGTGGCG TGCGGTCGTG GGCGGGAGGT GGTGGTGGTG 
    GTGCTGCTGC ATTGGGTGCG TCGTGGGTGG ATTCGGATGG TTGCTTGGTA 
    GGATTTCCCT TTTCATGGTC GATGGGGTGG AAGGCGGCCA TGGTGGGGGG 
    TAAGTTGGCC GGCGTCGGCG GCGAGAAGCT CAGGTGCGCC GCGGCGCCCG 
    CCGCGGCGGC GCGGTCGCGG ATGAAGCTGT GGATGGTGCG CGCCACCACC 
    ACGGTGCTCC TCTGGACCTG CGTCGTGCAG CTCACCGCCG TCGGCGACAC 
    CTGGGGCCCC CGCGTGCTCA AGGGCTGGCC CTCCTGCATC ACCTCGCCCG 
    ACGACGACGC CGCCTCCGCC ACGCTCGCCG CCGCCCGCCC GGAGCCCGTC 
    GTCGACAAGG CCGTGCTACC GCCCAAAAGA ATTTATAGGA ACAATGGTTA 
    TCTGATGGTC TCATGTAATG GTGGACTTAA TCAAATGCGA GCTGCAATAT 
    GCGACATGGT TGTAATTGCG AGATATTTGA ATGTCACTTT GGTTGTGCCA 
    GAGTTGGATA AGACATCATT TTGGAATGAT CCAAGTGAGT TCCAAGATAT 
    ATTCGATGTT GAACACTTTA TAACCTCTTT AAGAGATGAA GTTCGCATAT 
    TGAGAGAACT GCCTCCAAGG GTAAAACGAA GAGTTGAACA TGGGATGTAC 
    CACTCAATGC CACCAATAAG TTGGTCTGAT ATCTCCTATT ACCATAACCA 
    GATTCTCCCT TTGATACGGA AGTACAAGGT TCTCCATTTG AACAGAACTG 
    ATGCTAGGCT AGCAAACAAT GGTTTACCTA TGGAGATTCA GAAACTGCGT 
    TGCCGAGTAA ACTATGCCTC CTTGAGATTC ACTTCGCAAA TTGAGGAGTT 
    GGGAAAGAGA GTAATTAGGA TACTCCGCCA AAATGGCCCT TTCTTGGTTC 
    TTCACTTACG TTATGAAATG GATATGCTGG CTTTCTCTGG CTGTACACAA 
    GGTTGCAGTA ATGAAGAAGC AGACGACCTC ACAAGAATGA GGTACGCTTA 
    TCCATGGTGG AAGGAGAAAA TTATAAATTC AGAATTGAAA AGAAAGGATG 
    GTCTTTGCCC ATTGACGCCA GAGGAGACTG CCCTTGTCCT CAGGGCATTG 
    GACATCGATA GAAGCATGCA AATATATATT GCAGCTGGAG AAATATATGG 
    TGGAAAGCGC AGAATGTCTG CTCTCACTTC AGCGTATCCT AATGTGGTGA 
    GGAAAGAGAC ACTTTTGGAA CCTTCTGATC TAATGTTCTT CCAGAACCAC 
    TCATCACAAA TGGCAGCACT AGATTACTTG GTTTCTTTGG AAAGTGACAT 
    CTTTGTTCCT ACATATGATG GCAATATGGC TAAAGTTGTC GAGGGTCATC 
    GGAGATACAT GGGGTTCAAG AAGACAATCT TGTTAGACCG AAAACTTATT 
    GTTGAGCTAG TAGATCAATA CAACAACAGT TCTTTGCGAT GGGATGAGTT 
    CTCTTTAATG CTCAAGGCTG CCCATGCAAA CCGGATGGGA TCAGCTTCAA 
    AGAGGACGGT GATTCTTGAC AGACCTAAGG AAGAGGACTA TTTTTATGCC 
    AATCCCCAAG AATGCCTGCA AGATTCTAAT CTCTTACATA CATCATGATA 
    TCCACTATGT TAATATTTCA TCCACGCTAT ACTGTTCCAT TCTTTCGTAA 
    ATGCAACTGT GAATCAAGAG TTGGGGTCCT CGCTATTTTG AAGTGAAAAG 
    GCGGCTCGGC CTCAAGCTTG AGCCATAGAT GAATTCAAAC TCAAGGACAA 
    GGGAGGTAAG GGGGGTGTTG TTTGTAGTTG GTAAATACAC ATAATAGAAA 
    TGGAGGCAGA TTTGTTTATT CCACAAAATA AAGAGTAACA CTCTTTGTAT 
    AGATGGTTGA TAGAATCTAC CATGAAGGCC AAGGTAATTT AAAGAGAGAT 
    GCTGGATCCC CATCTCGGAT CTCGGGTGGT GTAACATAGC AATTGTTCTT 
    GGTAGCCCCC CCTCCCTCCC CATCGGCAAA AATTTTGTCC ACCAAAGTTG 
    TTGGAAAAAG AATTATATAT ACACTGTTTA TTGAATCGAT ACAGCCTTTA 
    TGAAGATATA TGGTAACTTG TGCAGAATGT TTCTACCACT TGTAATTTGT 
    AATGCTGCTC TTGCATTGAT TTCCTACATG GAGGTTGCTT TGTTAACCTG 
    TGAATTGGTG ATCTATGTTC TGATGCAGGA TAAATAAATA GGATCGGTGC 
    AAGCTAAGAG CACCCGGTGT TGTTTGCCTT CTTTAATCCA TGAACTCCCT 
    CCATTTCACA ATGCAAGTCA TTCTAGCATT TCCCATATTC ATATTAATGT 
    TAATGAATCT AGACATATAT CTATCTAGAT TTATTAACAT CAATATGCAT 
    ATGGAAAATA TTAGAATGAC TTACATTGTG AAACGGGGGA AGTATCAATT 
    AGGAGAGTTC TAACGGTTTG GCGGTGATTA GCCGTTATGA GAAACGAACA 
    AAAGCTGCAG ATTTGCAGTT TTTTTCTTCT TTTTTGAACA AATTGCGGGT 
    TAGTACTTTA TGGTTGAAGT TGATATTAGT ATGATGTGCT CATCAGTCAT 
    CAGTTCTGAC TTGTGCCCCA GATTTCTATC TTTTTGCTTG TGTCCTTTGC 
    GTTTCTTCTT TTCTTTTTCT TTTAATCACT GGCTCAGTAG TCAGCAGGTA 
    TTAGTTTTGG TTGTTGTCAC AACTATTATG TGCCACTCTT TTAAAGAAAT 
    TCGGCATACT TCATTTTCTC GGC

    Gene models with high sequence identity

    1. AT5G15740.1 [+] show detail - O-fucosyltransferase family protein
      E-value: 0; Score: 726.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G15740.1

    Model type
    Protein coding
    Short Description
    O-fucosyltransferase family protein
    Computational Description
    O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G02250.1); Has 822 Blast hits to 815 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 822; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR