K24437

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24437

Determination of introduced cDNA(s)

  • J013005L22 - Rice Full-length cDNAs - Original: J013005L22

    full reading [+] show sequence

    Nucleotide sequence: J013005L22 - full reading
    GTTTTTTCGA TAAGGGGACT CATCTCTCAA GTGCACTGCT TCTCTTCGTC 
    TCTTCCCCCA TCTCCGGCGA GCCGTACTGG TCCAACTCCG GCGGCCAACG
    ACCCCTCAAC TACCAGCTGT GGAGGAGAAC ATGGATGTGC AGGTGAAGGA
    CTGGAGGAAC AAGGTCCGGG AACTGAGCTA TGATATCGAG GATTGCATCG
    ATTTATTCAT GCACAAATTG AATCGCGGGG ATGATAAGGT CAACATTGTT
    CTCAAGATGG CAAAGAAGAT TAGAATGTTA TGGTCAAGGC ATCAGATTGC
    TAACCAGATC CAAGAACTTA AGGCTCGTGT CAAGGAAGAG AGTGATCGCC
    GTTTGAGGTA CTACTTCAGC GAGTGCAATG CACATGTCGA CGGGACTAAA
    ATTGATCCCC GCCTACCGGC GCTTTATGTT GAAGAAGAGA AGCTTGTTGG
    TATCCATGGC CCTATGGAAG AGATCATTGA ATTGTTGATG AAAGAGGATG
    GTTCGGGGCA AAAACTCAAA GTGGTATCCA TTGTGGGTTT TGGCGGACTC
    GGCAAAACTA CTCTGGCTAA CCAAGTATAC AACAAAATCA AGGATCAATT
    TGATTGCTCA GCTTTTATAT CTGTTTCGCA GAGTCCTAAC ATAAAGAAAA
    TTTTATTTGA TATGCTTAAA GATGTGACCA GCCGAGACAA CTCTGATGAT
    GATAAGCAAA TTAAAGTTGT TGGGGTCAAA GGAGATAAAT CCGATGATGA
    GAGGCAACTC ATTGGTAAGC TCAGAGTATT CCTAGAGAAT AAGAGGTACT
    TCATCATTGT TGATGATATC TGGAGTGCAT CTGCATGGGA ACATGTGAGG
    TTAGCTTTGC CTGAGAACAG TCTTTGTAGT AGAATAATTA CAACCACACG
    GAATGTCAAT GTGGCAAAAT CATGCTGCTC TGGTTTTCAA GGTTCTGTTT
    ACAACATTCA ACCTCTAAAT GAGCAAGACT CTAAGAAGCT ATTTCTGAAA
    AGGCTTTTCC ACTCAGACTC CAATTTTCCT ACTCACTTGG AAGAAGTTTC
    ACATGCAATC ATTAAAAAGT GCCATGGCTT TCCATTAGCT ATTATCTGTT
    TAGCTAGTCT GCTAGCTAGT AAATCTGATA CAAAAGACCA ATGGGAGCAA
    GTGCACAATT CTCTCAGTTC TGCGTTTAGT TCACAAGGGA TGAGCGATAT
    ACTGCTGCTT AGCTATTATG ATCTACCCTA TCATCTGAAG ACATGCTTGT
    TGTATCTTAG TGTATTTCCA GAGGATTATA AGATTGATAG AGATGAACTG
    ATATGGAGAT GGATAGCTGA AGGTTTCATC ACTGAAGTGA AGGGTCAAAC
    ATTGGACCAA GTTGGAGGGA GTTACTTTAA TGAGCTTATC AACAGAAACA
    TGATTCAACC AATTGACATC AAATATGATG GTACCGCAAA TGCTTGTCGA
    GTACATGATA TGGTGCTTAA CCTTATCATA TCCATTTCAT CTGAGGAAAA
    TTTTCTCACC GTAGTTGACG AGCAAGGGTA TAAATATTTG GGTAATAAGA
    TTCGACGGCT CTCATTCCAG TCCAACTCTG TTGAGAATGA TGTGAATGTA
    GTTCAAAAGA TCATGGACAA CTTGTCACAG GTTCGTTCGC TAAGCTTCTT
    TGAGGTACCA GAGAAAATAC CTCCTTTCTT AAAATTCCAT TCATTGAGTG
    TATTGGTTTT AGTGGATTAT GATTTTTGTC TTGGTAATGG ACACATTAAA
    TACCTTGGAA GTTTTTTCCA ATTGAAGTAT TTGAGAGTCA CTTCTTATGG
    CATTACCCAG CTCCCAGATC AATTCGGGAA CCTCCATTAT CTACAAACTC
    TGGATATACG TGGCAGTGGA ATCGAAAAGT TTCCGCCAAC CGTGGTCCGT
    TTGCATAACT TGGCTCGTCT ACTTGTTGGC AATAAAGTGC AATTGCCTGA
    TGGTATTGGA GATCTGCAAT CCTTACAGGT GCTGTCTTCT GCTCGGTTGT
    ATAAACCCCT AAAACTTGTG GAAGATCTCA GGAGATTGAC CAAACTAAGG
    ACGCTTGTGA TAGTTCTTCA TGGCAGTGAT ACACTTGGTG CTCATGAGAT
    GGGAAGGTAT GAGGAAGCTT TGGAGTCTTC TCTTACTGTG TTGGGCAAAC
    ACAAAATTCA GTCACTCGAA ATTTCATGTT GTGATTACTT GAGAGATAAA
    TTACTGGATT TGTTGTGCTG CACTGTTCCA AACATTCAGA AGCTTGTAAT
    ATCTGGCAAT TGCATAAATA GGCCTTCTCA GCAGATGCTA TCTCTTGTTA
    ATCTCGCTCA CCTAGACATC TATTTCCAGA GGATTAAGCA GGAAGATCTC
    AGTGTCCTTG GAAGCATATC TACTCTGCTC TACCTCCGGT TGAAACTGCA
    TTTTGTGCCT GACGAAAGGC TCTGTATCAG CAGCCAACAA TTCCAGAGCC
    TGATGGAGTT CAGATTCATA TATTATGAGG GGGGTGGCTT GAGGATGTTA
    TTTCAACAGG AAGCAATGGC AAAGCTTCGA CGGTTACAGA TTCGGTTTAG
    AGCAGAGGAA ATGGAGTCTA ATGCAGGTTT CGAGTTCAGT TTTCATCACC
    TCTCAAGCCT GGAGGACCTT CATGCCACGA TTAGTTGTTA TAGAGCCACT
    AGAAGTAGCG TGGAGGCTGC AGAAGCTGCC ATCAGGAATG CAGCTAGTAT
    CCATCCTGGA CATCTAAAAG TTTCAATCAT AAGAGAGTGG GAAAGCCGCA
    TGGCGGGGCT CAGAGAGAGA TGAATCTTGA GTATAGAAAT GATGTAAGGA
    GGATGTTCAG AAAGAGGACC AAATGGCAGT TTCTTCAGAT TTTAGAAGTC
    CTTTCAGGAC CAGCAGATTG GCCAACCACG TAATCTGATA TATAGAGGAT
    TAGAATCAGA GATCCATATC AGTGTCTGTC ACAAGAATTA AGAAGCTATG
    CAAGGTATTG TTTTCCCTCT AGAGACAGGA ATGGAATTCT TTTTAATGAA
    TGAGTAGAGT CAAGGCGCGT GAGTTGCTAG TTCGATTGAT TGAGCTTGCT
    ACCTGGCTAT TTGTATCTCC CTAAATATTT TTCCTCAAAA TTACTTTTGG
    CACCC

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 3e-64; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 9.6e-26
    superfamily P-loop containing nucleoside triphosphate hyd 6.8e-19
    FPrintScan Disease resistance protein 0.00000000000019
    FPrintScan Disease resistance protein 0.00000000000019
    FPrintScan Disease resistance protein 0.00000000000019
    FPrintScan Disease resistance protein 0.00000000000019
    Gene3D no description 0.0000000025
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00016
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00016
    Coil coiled-coil 0
    HMMPfam NB-ARC 2.6e-66

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR