K24439

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24439

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24439

Determination of introduced cDNA(s)

  • J033070L24 - Rice Full-length cDNAs - Original: J033070L24

    full reading [+] show sequence

    Nucleotide sequence: J033070L24 - full reading 
    GAGCTACACA CGGAAACGGC CGCCGAACAA AGCGAACAAC TACTAGTCGT 
    CTCGTCGTGC TGCGCACTCG CCCCATCGAC GAGAGATCGC CTCCGCCTCG 
    CACCCGCCGG CGCCGGCGCC GCCTCCTCCT CCTCCTCCCG CCGTTCCACC 
    GCCGCGCCTC TTCCCCGCCC CGATCGGCTG CCGCCGCCGC AGCTGCTCGC 
    CGCCTCGTTT CCGACTCCCA AGGGCATTCC TCCATGGGTG GGGCAAATGA 
    CTCAAGTCCA TCCTCTAAAC TTCACACAAG ACTGAGACTA TGGGAGTTCC 
    CAGACCGCTA TGTATTTGAG CCGATTGATG GTCTTGCTGA CTTGTATCTG 
    TCAGCTAACC GTTCTGATGG TTCAATGAAT CTAGTTGAAG AGTTGCCACC 
    ACGTGACTCT TCTACAAAAC CAAAATGTCA AACAGTGTAT GGTGTGATAG 
    GAGTTCTCAA GCTTTCAGTT GGATCATATT TTTTAGTGAT AACAGGCCGT 
    GATTGTGTGG GATCCTACTT GGGACATGCA ATTTTTAAAG TGACAGGACT 
    AAAAGTTCTC CCCTGCAGTA ACTCACGTAG CACTTCTGGC AATCAGAGTA 
    AAATGGAAAC AGAATTTTCA GAACTCCTGC ATGCTGCAGA GAAGACTATA 
    GGCCTGTACT TCTCATATGA TATCAACTTA ACACTTACTT TGCAGAGGCT 
    ACATAATCTT GGTGATGAGT TCAAATCACT TCCGCTTTGT AGACAGGCAG 
    AACCAAGATT TCTATGGAAC AGTTACTTGC TGGAACCTCT AATTGAGAAC 
    AAGCTGGACC AGTACTTGTT GCCAGTCATT CAAGGCAGCT TTCAGAATAT 
    CCATGCAGAA GTTGGATCGG AGAAGGTAAA TGTGACCCTG ATTGCACGTA 
    GGTGCACACG GAGGATAGGT ACACGAATGT GGAGACGTGG AGCTGACCCA 
    GAGGGTTATG CTGCCAACTT TGTTGAATCA GAGCAGATAA TGGAATCAAA 
    AGGGTTCACA GCATCCTATG TACAAGTTCG AGGGTCCATA CCATTCTTGT 
    GGGTGCAGAT TGTTGATTTG ACATATAAAC CTAGCTTTGA CATTGTTAGA 
    CAAGAGGAGG CGCCACGCAT ACTTGAGCAG CACTTTCATG ATTTACAGAA 
    GAAATATGGA GCTGTATTGG CTGTTGATCT TGTCAATACA CACGGTGGTG 
    AAGGTCGCCT CCATGACAGA TATGCAAAAT CTATTGAACC TATTCTCAGT 
    GAAGACATAA GATATGTGCA TTTTGACTTC CATCGAATCT GTGGTCATAT 
    TCACTTTGAG CGCCTTTCTC AGCTCTACAA TCAAATTGAA GATTATCTCA 
    AGAAACATAG GTATTTCCTT TTGAATGGTA AAGGTGAAAA AATTGAGGAG 
    CAGACTGGCA CTATCAGGAC AAATTGTGTC GATTGCTTAG ATCGCACCAA 
    TGTAACTCAG AGCATGATTG GAGGAAAGAT ACTAGAAAAC CAACTTCAGC 
    GAATAGGGGT TCTCGGTGTT AATGATACGA TAAGCAACCA TCCAGCTTTT 
    GATGCAAAAT ACAAAGTTTT ATGGGCCAAC CATGGAGATT CAATAAGCAC 
    TCAGTACTCT GGAACTCCGG CATTGAAGGG CGATTTTGTT CGGTATGGGA 
    AGAGAAGTAC CCAGGGAATT CTGAATGATC TGTGGAATTC ACTTGCTAGA 
    TACTACTTGA ATAACTTTGC AGATGGCACT AAACAGGATG CCATGGATCT 
    ACTTCAAGGA CATTACATTA TATCTGTTAG CCGCGACATG GCAGGTCCAA 
    GCAAAGCAGG ACTTCTAGAG AATTATGCGT CCTTCCGCCT TGCTTTTGCA 
    TTGGTTATGG GAGCTCTTAT GTTCATGATG ATGTCACTAA GACAAGCCAG 
    GAATGATGTT CGCCATTTAG TGTTGTCACT TCTATGGGCT GGTCTTTGCA 
    TTGGCATCAC ACATTTTGTC AGAGCCAATG GTCGGGTGTT CACCAACAGA 
    CCTCGTTTTT ATCAGTCGCG CCATTGAAGC AAAACAACCA CTTTACACGG 
    ACACTGAGCT GCCTCATAGG TTATCATTTT TCATCAGACA GTCAGCACCT 
    TGTTTCATAT GAAGATATAT TGGTCGCATT TTTTGCTGGG AATTTGACCC 
    TCCCCTATAT TGTAATGAGT TTTATTTTCC ATTTTTGTAA CAAGTTTTTT 
    TTTCCTTTTC CTTCTCATTG TTTTGATTTC CAGCCATCTT TTGGGGCATC 
    ACGTTCACGA TTCTGTTTGA CTTAGCAGTA TATAATTCAA TACACCTCCT 
    GTACACTGTT TCATCGACAA CAACTATATT TGACATATTT TTCTTGCAAG 
    GATTAATTAT GTTCAAATTC CAGAATGGAT TACTGATCAG TAAAAAATAT 
    GTTGGCACAG TTTTTCAAGA TCC

    Gene models with high sequence identity

    1. AT3G51460.1 [+] show detail - Phosphoinositide phosphatase family protein
      E-value: 0; Score: 780.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Synaptojanin, N-terminal 1.7e-83
    ProfileScan Synaptojanin, N-terminal 73.982
    HMMPanther SUPPRESSOR OF ACTIN (SAC) 2.1e-174
    HMMPanther INOSITOL 5-PHOSPHATASE 2.1e-174

    See the detailed result >

    AT3G51460.1

    Model type
    Protein coding
    Short Description
    Phosphoinositide phosphatase family protein
    Curator Summary
    Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development.
    Computational Description
    ROOT HAIR DEFECTIVE4 (RHD4); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, phosphatidylinositol-4-phosphate phosphatase activity; INVOLVED IN: root hair cell tip growth; LOCATED IN: plasma membrane of cell tip, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT5G66020.1); Has 1757 Blast hits to 1639 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 573; Fungi - 593; Plants - 286; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR