K24440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24440

Determination of introduced cDNA(s)

J033112H20 - Rice Full-length cDNAs - Original: J033112H20

full reading [+] show sequence

GACTTCTCCC ACCGCCGCCG CCGCCGCCGC CGAGGAAGAA GCTCTGCTCC 
GCCATGGCCG GCGACGCGCT GCGTGCGGCC GATCTCCCCG GCCGAGGACG 
CGGGCTCCTC GCGGCGCGCA GCATCCGGGA GGGGGAGGTC ATCCTCACCG 
AGCAGCCGCT GCTCCTCTAC CCGGCCTCGC TCGCCTCCCT CCCCTCCTTC 
TGCTCCGCCT GCTTCCGCTC CCTCTCCGCC GCCGCATCCC CCTGCCCCTC 
CTGCCGCGCC GCGGGATTCT GCTCCCCGTC CTGCGCCGCC GCCTCCCACC 
CGCGCCTGCA CGCCATGGTG GCGGCGCTGG TGCCGCCGCA GATGCTTCCG 
CCAGGGTTCT CGCCGGACCT CACGGCGGCG CTCCTCTCCA AGGACCGGAC 
CAACAGCTTC TCCATCATGG AGCCCTACCG CCCCGAGGTG CCGCAGCCTC 
TCCGGAAGGC GAGGGCCTAC GCCGTGTACC CGCGGGCGTC GCTGCTGAAC 
CATGATTGCC TCCCCAATGC TTGCCATTTC GATTACGCCG ATAGGCCGGG 
TCCCGGGAAC ACCGACATTG TGGTGCGAGC TCTTCACGAC ATCACCGAGG 
GGAGGGAGGT GTGCCTCAGC TACTTCGCGG CCAATTGGCA GTACAAGGAT 
CGGCAGCAGA GGTTGCTGGA GGACTATGGG TTCCGATGCG AGTGTGAGCG 
GTGTCAGGTG GAGAGCAAGT GGAAGCAAGA TGATGATAGC GATGGCGGCG 
ATGGGGATGA CACCATGGAA GAGGAGGAAG AGGATGGTAA TGGTGGAGAA 
GGTGGTGATG ATGGGATGGA GCAGGAGGAG GGGGATGGTG GTAGCGATAG 
CGATGATGAT TTCCGCACTC ATACTTCTTT GTAAGGTATC TGTGTAACCA 
TGGTGAATGC TATGGCATGC TTGCGCCACT TCCGCCCTTG CCAAACGGTG 
AGCCGTCCCA TGTGTTTGAG TGCAATGTCT GTGGGAACCT GAAGAACGAA 
GATGAAATTG ATGCTCCTGA TGGTGGTGAT TCCAGCATGG CGGATTAGGA 
TGAGCTAAGC ATAACCGATC TGCTTGCTGC TTCTTTTGGT GGGAGCTCAT 
AACACTTTGG TGGTAGGACT TGGGAGTACT TCTGTAAACT GGTTGGAGTT 
TTGACAAAAA CGGGAGTTTA ATACACCTAA ATATGGAGAG ATGTATGAAC 
AGAACAACAT TCATTGACTG AATGTGGAAC TAGCAATCCT TCTTGTACTC 
AGCAACGTAT ATATGAATGT GTATCCGTTG TAGGGAGTCC TGCTTGTTCT 
GTACAATTTC TAATGCTCCC CCTTTATCTA GAATGGTGAT TTAGACTTGA 
GAAATTTATG CAGTCAGAAG CTGATCTCCT GTGATACTTG AAACATTCCG 
TTTTGTCATG TCATGGTGTA GTTGATTGTA TGGCATTGCA TCTCTTGTCT 
ACTGATGAGA GGTCAAATCT CATTCC

Gene models with high sequence identity

AT2G19640.2 [+] show detail - ASH1-related protein 2
E-value: 3e-46; Score: 183.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	SET domain	2e-09
superfamily	SET domain	2.9e-23
HMMPanther	SET AND MYND DOMAIN CONTAINING	2.4e-32
HMMPanther	SET AND MYND DOMAIN CONTAINING	2.4e-32
HMMSmart	SET domain	3.6e-10
ProfileScan	SET domain	8.936

See the detailed result >

AT2G19640.2

Model type: Protein coding
Short Description: ASH1-related protein 2
Computational Description: ASH1-related protein 2 (ASHR2); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain protein 38 (TAIR:AT5G06620.1); Has 1755 Blast hits to 1733 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 753; Fungi - 380; Plants - 323; Viruses - 3; Other Eukaryotes - 296 (source: NCBI BLink).
Link: InterPro Scan - TAIR