K24450

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24450

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24450

Determination of introduced cDNA(s)

  • J033068N16 - Rice Full-length cDNAs - Original: J033068N16

    full reading [+] show sequence

    Nucleotide sequence: J033068N16 - full reading 
    GGGTTCGCCT TGCTTCCCAA TCGTCCCAGC GGCGTGTGCC CCTCACACCC 
    TCGTCCAGCC AAGGCGGCGG CGCACAGCCA GGAGAAGCCG TCGAGCGGCG 
    GCGCACCGCG CACCGCGCAC GGAGCACCCC TCCCCCCCCT GTTACCGTCC 
    CCTCCCGCTG CAGAAGGCGC CGGCGCACGG CGTCGTCCCA TCCCTAATTC 
    CGGCCCCCCC TCTGGTTCAC TCCCCACGTT TGAAGTCAGC TTGGTTCTGA 
    CTCCAGGGAT CTCAACTATC CTGTCCAGGA TCAAGACCAA ACCCGTCAGC 
    CATCATGCAG GCTAGCGACA GGTTCAACAT AAATTCTCAA CTTGAGCATC 
    TTCAAGCGAA ATATGTGGGC ACAGGGCATG CTGACTTGAA TCGATTTGAA 
    TGGGCAGTAA ACATCCAAAG GGATAGCTAT GCATCCTATA TTGGGCACTA 
    TCCAATGCTG GCATATTTTT CCATTGCTGA GAATGAATCA ATTGGAAGAG 
    AGCGTTACAA TTTTATGCAG AAAATGCTAC TTCCGTGTGG TCTGCCTCCT 
    GAGAGAGACG AAGATTGAGG TGGCCTTCGG GTCTGGCGTT CAGTGTTACT 
    GCAACTACTG GAACCTAGGG TTCAGTATCA GTTTGATATC CAAAGCAAGA 
    TCAAACTAAT CTTTGCCTAG CCACCTACTA CTACTATGTA AGACTCTGTC 
    CATCTTGAAC ATCTGAAGCA CTCTGTGTAC CCTTTTCGAA CATGTTCATC 
    AGTAATGTTC GGCGCATGTG TGTAACGGAT CTTTTAGTTA AGGTGAATGT 
    TGAGGGACAA AATGTTTCTG GAGCGATCAT TCATATGTTT GCATAAGCTC 
    CTTGCCGCTG CAAATATGGC ATATTAGAAA AATATCACTA CTATTTGCTA 
    TATCGGCTAC GTGCCACTGA AATTTGGGGA AATTGGAACC ATGCCACTCC 
    CGTCC

    Gene models with high sequence identity

    1. AT4G14342.1 [+] show detail - Splicing factor 3B subunit 5/RDS3 complex subunit 10
      E-value: 1e-44; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Splicing factor 3B subunit 5/RDS3 complex subunit 10 3.6e-53
    HMMPfam Splicing factor 3B subunit 5/RDS3 complex subunit 10 1.6e-36

    See the detailed result >

    AT4G14342.1

    Model type
    Protein coding
    Short Description
    Splicing factor 3B subunit 5/RDS3 complex subunit 10
    Computational Description
    Splicing factor 3B subunit 5/RDS3 complex subunit 10; CONTAINS InterPro DOMAIN/s: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro:IPR009846), Splicing factor 3B, subunit 5 (InterPro:IPR017089); BEST Arabidopsis thaliana protein match is: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (TAIR:AT3G23325.1); Has 333 Blast hits to 333 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 97; Plants - 62; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR