K24505

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24505

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24505

Determination of introduced cDNA(s)

  • J033066J12 - Rice Full-length cDNAs - Original: J033066J12

    full reading [+] show sequence

    Nucleotide sequence: J033066J12 - full reading
    GCTGGTCTCT CGCTCTCTTC GCTCGCGGCG GCTTCTCCGC CTCCGCCTCC 
    GCCGCCCTCT CCTCCTCTCG CCTCGCCGCC GGCGCCGCCA GCCACCGCGC
    GGGTCGGGCG GGCCGTATCT TCCTTTCTGT TCCGATGGCT TCCGCGAAGG
    TGGAGAACCG CGGCGGCGGT GGGTTCGGTT CGAAGAGGTC ACGCAACGAC
    GTGTCTGTAA GGGAGGGGGA CTGGACTTGT CCTCAGTGTG GTAATGTCAA
    CTTCAGTTTT AGAAATGTTT GCAACCGCGG AGCCTGTGGT GCACCCCGTC
    CATCACCGAG TCTAAGCCCA AGAGTGCCAC CTCCTCCTGC TGCTGGATAT
    GATCGGCCAC ATCTTGGATA TGATCGGCCA CATCTGTTTT ATGGTAGTGC
    TGGCACCCCA CCTCCTATTC CTCTTGGATC TGGTAGCTAT GGTGCCCCCT
    ATCCACATCT TGGCTTGCGG TATGGATATG GTCCACCAGT AGGACCTCCT
    GCTTCATATG GCCTTTTTTC TTCTTATGGT CAACCTGGAC CAATGGGCAG
    TCCGATGGGA GGCATGGGCT ATGGCCCTGG ACCTGAGCTA GGCCGATATG
    GTTATGGTTT TAGAGGATCT CCAATGCCGG TTTCTAGCCC ATGGTCTGGT
    GGAGCATTAG TGGAAAATAA TGACAGCTCT GCTTCACGCA AGCGTCGTGG
    AGGCCCAGAT GGAATGGCTG AGAATGACTG GATCTGCCCA AAGTGTGAGA
    ATGTCAACTT TTCCTTCAGA AACAGTTGCA ATATGAAGAA ATGTGGAGCT
    CCAAGGCCAA GCCCTGGATC TAATGCTACC CCATGTCGCA AAGACAAGGA
    CGCTCCGGAA GGGAGCTGGA CCTGCCCGGA GTGCAACAAC CTGAACTACC
    CTTTCCGCAC GGCGTGCAAT CGGAAAGGCT GCGGAAGCAG CAGGCCGGCA
    GCGGCCACGG CGAACTAGGA CCCTACTAAC TTTGCGCCGG CGATTGGGGG
    CAGATAGAGT ATTGTTGTAT CCTAGCTATA TACAAGTTAA TTTAAACTGT
    AAACGGCTCA AATATATTTT CTTGTGGCCT GAGATTCGTT GTGCCTGATT
    TTTAAATTCG CCTTCTGAAT TTCCTTTACG ATTTATAGAG CTTTTATATA
    CATTGGACT

    Gene models with high sequence identity

    1. AT1G67325.1 [+] show detail - Ran BP2/NZF zinc finger-like superfamily protein
      E-value: 5e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZINC FINGER PROTEIN 5e-24
    HMMPfam Zinc finger, RanBP2-type 1.8e-08
    HMMPfam Zinc finger, RanBP2-type 1.8e-05
    HMMSmart Zinc finger, RanBP2-type 7.8e-05
    HMMSmart Zinc finger, RanBP2-type 0.00081
    HMMSmart Zinc finger, RanBP2-type 0.0045
    superfamily Znf265, first zinc-finger domain 1.6e-09
    superfamily Znf265, first zinc-finger domain 3.4e-07
    superfamily Znf265, first zinc-finger domain 4.8e-06

    See the detailed result >

    AT1G67325.1

    Model type
    Protein coding
    Short Description
    Ran BP2/NZF zinc finger-like superfamily protein
    Computational Description
    Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013008G03 - Rice Full-length cDNAs - Original: J013008G03

    full reading [+] show sequence

    Nucleotide sequence: J013008G03 - full reading
    GGCTCGCGCA CTACACCGGC GAGCCGCGGG CGGCGGCGGC GGCTGGGAGT 
    ACGGGAGACG CCGGAATACT AGCCTCGCAT CCTCCTCCCT CGAGTTCGCT
    GCGGGACCGC GCCATCCTCG TCGGAGCCCC GGGCCCAGGG GACACGAGCT
    TCTCCGCCCT CTTGTCCTTC GGTCAGCACC GACGCCGCCG TCTCGCTCGC
    TCGCTCGATC GAGCCGTTGC TTGTGGCCGG AGGAAAGGCC TCAACAGTCA
    ATATGGCTGG CTCATTCATT ACTGGGGCTT TAATGCTTAT TCTTGGATAT
    GCATACCCAG CCTATGATTG CTACAAGACG GTGGAACTGA ACAAGCCTGA
    GATCGAGAAG TTGCGGTTCT GGTGTCAGTA CTGGATTTTA CTTGCTGTTC
    TAACTGTTTT TGATAGAGTT GGGGATAATT TTGTATCATG GTTGCCAATG
    TACAGTGAAG CAAAGCTGGC ATTTGTCGTA TTTTTGTGGT ATCCCAAAAC
    ACTGGGGACT GCCTATGTGT ATGAATCATT CTTTAAACCG TGGATTGCAA
    AATACGAAGC TGATATCGAT CACAATCTGC TTGAGTTGAG GACTAGAGCT
    TGCGACATGG CGGTTCTTTA CTTCCAGAAG GTTTCCAACT ATGGTCAGAC
    AAGGCTTTAT GAAATCTTGC AATATGTTGC TTCACAGTCA CAAACCCAAA
    CATCTCGCCC ACAGGCACGT GAACAGCAGC AGCGCCCACC ACCAGCACAG
    ACTCGGCAAG TGAACCCTGC ACCTCAGCCT GTTCCTGCAC CTTCGGTGCC
    TCCACTGCCA CCACAACCCA CCCAAGCTCC TTCTGCTCCA CCAAGGAACC
    AAACGCAGGA TACAACTCCA GTTCCTGTTC CTCCTCCTGG TGCAGAGTCT
    CTTGCCCAGC CACAGGCACA TGCTGGTCCT CCTCAAGCTA ACGCCAGCGA
    CGGCCCTCAG AACACTGAAG CTATGCAGAT TGATCCATCT GGTCCATCAA
    CAAGCAACGC ACGTCAGTCA TCAATACCAG ACGAAGATAC GCTCATCCAG
    GAGGCTATTC GGATGACGAG GGGCCGGCTT AGGAGGCGCA CGGCCGGGTC
    TGGACCTCCA CCAAGTTAGA ACCTACACCA AGGGTGATCT CGACACACCA
    TTCGCTCTAT GCTGGGATGA TTCTGCACCT TCGGGCGTTC AACTGATAAC
    AGAAGGAAAT GCTGGGTTGG TGAAAAGTGA TTCAAATATT TCAAATCCTC
    CTGGAGTGAA CGCACACATT CCTCCTCTTG ATGTGATGCC TGTTGCTGTC
    GTCTCACTAC TCCCAAATGT GCATAATAGA GGCAATGATG ACACATATCA
    GTAGCTTGGC ATGTCGAATG CATCAAGATG GGTCGAACTT GTCCATGAGG
    AGTCAGGTCC GTCATATTTG AATTTTGAAA AGTTCAACAT ACCAAAGTAT
    GCGTGACTGA CTTGCCGAAA ATCATCACAA AAATCAAATG GGTAATTAGT
    ATAGTTGATC TTGATCCCTT TGTTTTTAAT T

    Gene models with high sequence identity

    1. AT5G42560.1 [+] show detail - Abscisic acid-responsive (TB2/DP1, HVA22) family protein
      E-value: 6e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TB2/DP1/HVA22 related protein 1.2e-27
    HMMPanther HVA22-LIKE PROTEIN 1.3e-98
    HMMPanther TB2/DP1/HVA22 related protein 1.3e-98

    See the detailed result >

    AT5G42560.1

    Model type
    Protein coding
    Short Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein
    Computational Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR