K24505

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic) desaturated green (PATO:0001272) (Cauline leaf::Color::pale) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24505

Determination of introduced cDNA(s)

J033066J12 - Rice Full-length cDNAs - Original: J033066J12

full reading [+] show sequence

GCTGGTCTCT CGCTCTCTTC GCTCGCGGCG GCTTCTCCGC CTCCGCCTCC 
GCCGCCCTCT CCTCCTCTCG CCTCGCCGCC GGCGCCGCCA GCCACCGCGC 
GGGTCGGGCG GGCCGTATCT TCCTTTCTGT TCCGATGGCT TCCGCGAAGG 
TGGAGAACCG CGGCGGCGGT GGGTTCGGTT CGAAGAGGTC ACGCAACGAC 
GTGTCTGTAA GGGAGGGGGA CTGGACTTGT CCTCAGTGTG GTAATGTCAA 
CTTCAGTTTT AGAAATGTTT GCAACCGCGG AGCCTGTGGT GCACCCCGTC 
CATCACCGAG TCTAAGCCCA AGAGTGCCAC CTCCTCCTGC TGCTGGATAT 
GATCGGCCAC ATCTTGGATA TGATCGGCCA CATCTGTTTT ATGGTAGTGC 
TGGCACCCCA CCTCCTATTC CTCTTGGATC TGGTAGCTAT GGTGCCCCCT 
ATCCACATCT TGGCTTGCGG TATGGATATG GTCCACCAGT AGGACCTCCT 
GCTTCATATG GCCTTTTTTC TTCTTATGGT CAACCTGGAC CAATGGGCAG 
TCCGATGGGA GGCATGGGCT ATGGCCCTGG ACCTGAGCTA GGCCGATATG 
GTTATGGTTT TAGAGGATCT CCAATGCCGG TTTCTAGCCC ATGGTCTGGT 
GGAGCATTAG TGGAAAATAA TGACAGCTCT GCTTCACGCA AGCGTCGTGG 
AGGCCCAGAT GGAATGGCTG AGAATGACTG GATCTGCCCA AAGTGTGAGA 
ATGTCAACTT TTCCTTCAGA AACAGTTGCA ATATGAAGAA ATGTGGAGCT 
CCAAGGCCAA GCCCTGGATC TAATGCTACC CCATGTCGCA AAGACAAGGA 
CGCTCCGGAA GGGAGCTGGA CCTGCCCGGA GTGCAACAAC CTGAACTACC 
CTTTCCGCAC GGCGTGCAAT CGGAAAGGCT GCGGAAGCAG CAGGCCGGCA 
GCGGCCACGG CGAACTAGGA CCCTACTAAC TTTGCGCCGG CGATTGGGGG 
CAGATAGAGT ATTGTTGTAT CCTAGCTATA TACAAGTTAA TTTAAACTGT 
AAACGGCTCA AATATATTTT CTTGTGGCCT GAGATTCGTT GTGCCTGATT 
TTTAAATTCG CCTTCTGAAT TTCCTTTACG ATTTATAGAG CTTTTATATA 
CATTGGACT

Gene models with high sequence identity

AT1G67325.1 [+] show detail - Ran BP2/NZF zinc finger-like superfamily protein
E-value: 5e-37; Score: 152.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ZINC FINGER PROTEIN	5e-24
HMMPfam	Zinc finger, RanBP2-type	1.8e-08
HMMPfam	Zinc finger, RanBP2-type	1.8e-05
HMMSmart	Zinc finger, RanBP2-type	7.8e-05
HMMSmart	Zinc finger, RanBP2-type	0.00081
HMMSmart	Zinc finger, RanBP2-type	0.0045
superfamily	Znf265, first zinc-finger domain	1.6e-09
superfamily	Znf265, first zinc-finger domain	3.4e-07
superfamily	Znf265, first zinc-finger domain	4.8e-06

See the detailed result >

AT1G67325.1

Model type: Protein coding
Short Description: Ran BP2/NZF zinc finger-like superfamily protein
Computational Description: Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013008G03 - Rice Full-length cDNAs - Original: J013008G03

full reading [+] show sequence

GGCTCGCGCA CTACACCGGC GAGCCGCGGG CGGCGGCGGC GGCTGGGAGT 
ACGGGAGACG CCGGAATACT AGCCTCGCAT CCTCCTCCCT CGAGTTCGCT 
GCGGGACCGC GCCATCCTCG TCGGAGCCCC GGGCCCAGGG GACACGAGCT 
TCTCCGCCCT CTTGTCCTTC GGTCAGCACC GACGCCGCCG TCTCGCTCGC 
TCGCTCGATC GAGCCGTTGC TTGTGGCCGG AGGAAAGGCC TCAACAGTCA 
ATATGGCTGG CTCATTCATT ACTGGGGCTT TAATGCTTAT TCTTGGATAT 
GCATACCCAG CCTATGATTG CTACAAGACG GTGGAACTGA ACAAGCCTGA 
GATCGAGAAG TTGCGGTTCT GGTGTCAGTA CTGGATTTTA CTTGCTGTTC 
TAACTGTTTT TGATAGAGTT GGGGATAATT TTGTATCATG GTTGCCAATG 
TACAGTGAAG CAAAGCTGGC ATTTGTCGTA TTTTTGTGGT ATCCCAAAAC 
ACTGGGGACT GCCTATGTGT ATGAATCATT CTTTAAACCG TGGATTGCAA 
AATACGAAGC TGATATCGAT CACAATCTGC TTGAGTTGAG GACTAGAGCT 
TGCGACATGG CGGTTCTTTA CTTCCAGAAG GTTTCCAACT ATGGTCAGAC 
AAGGCTTTAT GAAATCTTGC AATATGTTGC TTCACAGTCA CAAACCCAAA 
CATCTCGCCC ACAGGCACGT GAACAGCAGC AGCGCCCACC ACCAGCACAG 
ACTCGGCAAG TGAACCCTGC ACCTCAGCCT GTTCCTGCAC CTTCGGTGCC 
TCCACTGCCA CCACAACCCA CCCAAGCTCC TTCTGCTCCA CCAAGGAACC 
AAACGCAGGA TACAACTCCA GTTCCTGTTC CTCCTCCTGG TGCAGAGTCT 
CTTGCCCAGC CACAGGCACA TGCTGGTCCT CCTCAAGCTA ACGCCAGCGA 
CGGCCCTCAG AACACTGAAG CTATGCAGAT TGATCCATCT GGTCCATCAA 
CAAGCAACGC ACGTCAGTCA TCAATACCAG ACGAAGATAC GCTCATCCAG 
GAGGCTATTC GGATGACGAG GGGCCGGCTT AGGAGGCGCA CGGCCGGGTC 
TGGACCTCCA CCAAGTTAGA ACCTACACCA AGGGTGATCT CGACACACCA 
TTCGCTCTAT GCTGGGATGA TTCTGCACCT TCGGGCGTTC AACTGATAAC 
AGAAGGAAAT GCTGGGTTGG TGAAAAGTGA TTCAAATATT TCAAATCCTC 
CTGGAGTGAA CGCACACATT CCTCCTCTTG ATGTGATGCC TGTTGCTGTC 
GTCTCACTAC TCCCAAATGT GCATAATAGA GGCAATGATG ACACATATCA 
GTAGCTTGGC ATGTCGAATG CATCAAGATG GGTCGAACTT GTCCATGAGG 
AGTCAGGTCC GTCATATTTG AATTTTGAAA AGTTCAACAT ACCAAAGTAT 
GCGTGACTGA CTTGCCGAAA ATCATCACAA AAATCAAATG GGTAATTAGT 
ATAGTTGATC TTGATCCCTT TGTTTTTAAT T

Gene models with high sequence identity

AT5G42560.1 [+] show detail - Abscisic acid-responsive (TB2/DP1, HVA22) family protein
E-value: 6e-64; Score: 242.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	TB2/DP1/HVA22 related protein	1.2e-27
HMMPanther	HVA22-LIKE PROTEIN	1.3e-98
HMMPanther	TB2/DP1/HVA22 related protein	1.3e-98

See the detailed result >

AT5G42560.1

Model type: Protein coding
Short Description: Abscisic acid-responsive (TB2/DP1, HVA22) family protein
Computational Description: Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR