K24515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24515

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24515

Determination of introduced cDNA(s)

  • J013108A22 - Rice Full-length cDNAs - Original: J013108A22

    full reading [+] show sequence

    Nucleotide sequence: J013108A22 - full reading 
    GATCATCCTC ATCGTCGCGC GCACCACTCG CCCGGTCGCC CCATCCCCAC 
    TCTGGCACTC CAGCGCCCAA AAACCTTCGC CTCCGCCTCC GCCATGGGAG 
    ACCACCGCGC CACGGCCAAG GTCCGCGTGA ACGGCGCGCC GGCAGAAGCG 
    ACGCTCTTCT GCACCGACCC GCCGGGTGCA GCTAATGGCG GCGGCGGAGA 
    TGGAGGGGAG CTCCGGTGGC GGTGCGCTGG TGGCGCCGCG GCGGAGCGCG 
    TGCTGTCGCT GGACGCGGAC GTGCTCGGGG TCGAGGCCAG GGGTAAGGAG 
    GTGGTCGTGA AGGCCTTCGT GCTGCCGGCG GACGCGGCGG CCAGGTCGGT 
    GTCCTGCGCC GCGGGTGCGG GGAAGGGAGG AGGAGGACGG AGGAGGCGCA 
    GGAGGGATTA CGTGTTCGAG ATGGCCGCCG GCGAGGACGC CGCCGCGGCC 
    TGGTGCGACA GGATGAGGGG CTCCCTGGAC TCTCTCGGCC GGCCTAAGAG 
    ATTGTTCATC CTGGTCAACC CCTTCGGCGG CAAAAAATGC GGAAAGAAGA 
    TTTACGAGGC AGAGATCAAG CCCCTGTTCG AGGCCGCCGG TGTCAACGTC 
    ACAATGCAAG AGACCCGGTA TCAGGGGCAC GCCCGGCAGG TGGCGTCTTC 
    TCTTGACCTT GCGCGCTACG ATGGCATTGT CTGTGTCAGC GGCGATGGTG 
    TCCTCGTGGA GGTAGTAAAT GGAATTCTAC AACGAATGGA TTGGGAGGAA 
    GCGATGAAGA TACCGATTGG GGTGGTTCCA GCAGGTACAG GAAATGGCAT 
    GGCTAAATCG CTGTTGCATT CTGCCAGTAA GACATACTCG GTTCCAAATG 
    CCGTATTTGC CATTATCAGA GGTTACAGTC AGTCCTTGGA TGTATGCACC 
    ATTGTGCAGG GAAGGAAGAA ATTTTTCAGT GTCTTGAATA TGACTTGGGG 
    TTTGGTGGCT GATATAGATA TTGAGTCTGA GAAGTACAGG TGGATGGGAA 
    GTGCACGCTT TGATTTCTAT GCTTTGGTTC GCATAATGAA CTTGAGAAAA 
    TACTACGGAA GTATTCAGTA TGTTCCTGCC CCCGGCTATG AGGCATATGG 
    AGATGTCGTC AAGCAGGTTG AGAATTGCAC TGTAGAATGC CAAGAACAGA 
    TTGGGAAGTC TTTGTGTTCT TATCAAGGTC CTTCCGTTGA GTTTCAAGGT 
    TCAGAATGGA GATCCCTTGA TGGTCCATTT GTGTCTATTT GGATCAACAA 
    CGTGCAATGG GCTGCTGAGA GTATCATGGC AGCTCCTGGG GCCAAGTTCT 
    CAGATGGCTA CATGGATGCA GTCATAGTCA GGGACTGTCC AAAGGCTGAT 
    CTTTTAGCCC TACTGATGAA GATGGGCGAT GGGAGTCATG TAAAATCACC 
    ATACGTTACG TATCTAAAGG TGAGATGTCT TCGGTTATCA CCAGGCCAGC 
    TTGTGGAGAA TCCAAAACGA GGTGGCATAA TAGACGTGGA CGGGGAGGCT 
    ATCGCTAGAG GAGAAGGAAC GTACGGCAAA AACCAGAAAC AGGACGTGAT 
    GGGTTATGGC CCTTCCATTC AGATGACAGT GCACCGAGCG TTGGCCACAA 
    TGTATTGTCC CAAATGACCC CTTTATCTCC TCTCTCTCCC GAGATTGGAG 
    TATTTATTCG TGCCAATTGT TTCGCTCTTT GTTAGAAAAA CCTGGTAATC 
    TTGAGCAGTA TTCATTAGAA ATATCTTTTG AAAAAAAGAA AACGCTGATA 
    CACCATTACA CCTTCGCATG AAACAACATA ACTGGATTAT TTTAACTGG

    Gene models with high sequence identity

    1. AT4G21534.1 [+] show detail - Diacylglycerol kinase family protein
      E-value: 7e-127; Score: 451.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SPHINGOSINE KINASE-RELATED 5.3e-142
    HMMPanther SPHINGOSINE KINASE 5.3e-142
    HMMPfam Diacylglycerol kinase, catalytic domain 9.3e-26
    HMMSmart Diacylglycerol kinase, catalytic domain 2.2e-08
    ProfileScan Diacylglycerol kinase, catalytic domain 39.821

    See the detailed result >

    AT4G21534.1

    Model type
    Protein coding
    Short Description
    Diacylglycerol kinase family protein
    Computational Description
    Diacylglycerol kinase family protein; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: sphingosine kinase 1 (TAIR:AT4G21540.1).
    Link
    InterPro Scan - TAIR