K24516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24516

Determination of introduced cDNA(s)

  • J013091F23 - Rice Full-length cDNAs - Original: J013091F23

    full reading [+] show sequence

    Nucleotide sequence: J013091F23 - full reading 
    GGTCGTCGCC TCACCTCGCG CCTCCGCTAC TACTGCTTGT CTGCTGCTGC 
    AGCTGCTGTT ATTACCATAC CGCGGGAGAA GGGGGGCCGA ACCCGAAGGC 
    GTGCGAGAGG GAGGTGAGGT GAGGTGGAGC CGTGGAGGCG CTTGTTTCGC 
    GTGCGAGACG GTGCTTCGTT TCGCCTCACG TTTTCCGAGG GCTACGGCGA 
    CTTGGTGGGA GCGCGGAGAA AATCTAGCGA GCCGTCGGAG TTGGGTGGCG 
    CGCGGCCGGC TGTGCTTCTG AAGGAGGAGT AATTGGAGTA GTTGCTTGCC 
    ATGGCCGAGA TCTGCTGCGA GGAGGCCATG TCGCCGCCGG CCACTGCCAC 
    GGCTGCTGTC GCGGCAGCGG TCTCCGCCTC GGCCGCCGCA GCCGTCTCCT 
    CGGCGATAGA CAGGCGGCGC CGCAGGATGG AGATGAGGCG CATCCGCATC 
    GCAAGTGATC TCGAGCTGCA GGCCGGAGAG GATGGGCGCC CTGGAAAGCG 
    GCAGAGGCTG GCGCGCACGG CGTCTGGCGC CCCGCGTCCT GACGAGGATT 
    CGGCGTCTGA GCGGCCGAGT TGTGGCCGTA CGGAGGAGTT CCCGAGGTAT 
    GGGGTCACCG CTGTGTGCGG CCGCCGTCGC GAGATGGAAG ACGCCGTGTC 
    CATCAGACCG GACTTCTTGC CGGCATCCGG CAAGTTCCAT TTTTACGGCG 
    TCTTCGACGG CCATGGCTGC TCCCATGTTG CGACGACGTG CCAGGACAGG 
    ATGCACGAGA TTGTCGCCGA GGAGCACAAC AAGTGGGCCT CCGGCGAAGT 
    GGCGCCTTGG AGGGATGTGA TGGAGAAGAG CTTCGCGCGG ATGGATGGGG 
    AGGTCGGTAA CCGGGCGTCC ACCCGCAGCG ACGACGAGCC CGCCTGCCCG 
    TGCGAGCAGC AGACGCCTTC GCGTCGCGAC CACGCGGGTT CCACCGCCGT 
    CGTCGCCGTC GTTAGCCCAA CACAGGTCGT CGTCGCCAAC GCCGGCGACT 
    CCCGCGCCGT CATCTCCCGT GCCGGCGTCC CCGTCGCACT ATCCGTTGAC 
    CACAAAGTAC GTATATGCTC GCATCACAGG GCCGGCTGAG CCTTTCCCGT 
    CCATCTGCAA AAAATCGTTA GTTTCTTGTC CATGAGCGTG TGCCTGACAT 
    GGTTGCTACT TGCTACCTCG GAACGGTTCA GCCCGATCGG CCCGACGAGC 
    TGGAACGAAT CGAGGCGGCG GGCGGCCGCG TCATTTACTG GGACGGCGCC 
    CGGGTGCTCG GCGTCCTCGC CATGTCTCGA GCCATCGGGG ATGGGTACCT 
    TAAGCCGTAC GTGACGTCGG AGCCGGAGGT GACCGTGACG GAGCGCACCG 
    ACGACGATGA GTGCCTGATC CTGGCCAGCG ACGGGCTATG GGACGTCGTG 
    ACCAACGAGA TGGCGTGTGA GGTCGTGAGG GCGTGCTTCC ACAACAACGG 
    TCCGCCGGCA CCGGCCGCGC GGCCGAGCGG CGTGCCCTCC TCGGCCGAGG 
    CGGCGGAAAC CGAGAACGGA GGAGCCGCAT CGGTGAAGGG GATAAGCAAG 
    GCGGAGTCCT CCGACAAGGC GTGCTCCGAC GCGGCCATGC TGCTGACGAA 
    GTTGGCGCTG GCGCGGCGGA GCGCGGACAA TGTCAGCGTC GTCGTCGTAG 
    ATCTCCGCCG GGGATTGTGA TTCTTGGCGC AATATTCTAT GCTCCATGAT 
    TGCTTTCTTT CTTCTTCTTT TTTTTATTCT AAGTTAATTT TTCCCTTCAA 
    ATTTCTTCCT TATTTCTCTG TTTAGTTTTA GTTTTACTAC TAGCTCCTAC 
    CAAGATAAAT GAATATAATA GCCTTTTTTT TCGC

    Gene models with high sequence identity

    1. AT1G07430.1 [+] show detail - highly ABA-induced PP2C gene 2
      E-value: 7e-83; Score: 132.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    HMMPfam Protein phosphatase 2C, N-terminal 6.5e-25
    HMMPfam Protein phosphatase 2C, N-terminal 1.1e-32
    Gene3D Protein phosphatase 2C-related 1.7e-29
    Gene3D Protein phosphatase 2C-related 1e-32
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 1.1e-58
    HMMPanther Protein phosphatase 2C 1.1e-58
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 6.8e-49
    HMMPanther Protein phosphatase 2C 6.8e-49
    Coil coiled-coil 0
    superfamily Protein phosphatase 2C-related 2e-33
    superfamily Protein phosphatase 2C-related 2.5e-36
    HMMSmart Protein phosphatase 2C-related 7.6e-14
    HMMSmart Protein phosphatase 2C-related 1.3e-05

    See the detailed result >

    AT1G07430.1

    Model type
    Protein coding
    Short Description
    highly ABA-induced PP2C gene 2
    Computational Description
    highly ABA-induced PP2C gene 2 (HAI2); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 3 (TAIR:AT2G29380.1); Has 6753 Blast hits to 6737 proteins in 407 species: Archae - 6; Bacteria - 193; Metazoa - 1700; Fungi - 794; Plants - 2782; Viruses - 7; Other Eukaryotes - 1271 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR