K24526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24526

Determination of introduced cDNA(s)

  • J013167O21 - Rice Full-length cDNAs - Original: J013167O21

    full reading [+] show sequence

    Nucleotide sequence: J013167O21 - full reading
    TTGGCACTGT CAGATTCTGT ATCCAGGGTG AATGGGTGGC AGTGGTGGTT 
    GATGATTGGA TCCCCTGTGA GTCTCCGGGG AAACCGGCAT TTGCTACTAG
    TAGAAAGCAA AATGAGCTGT GGGTATCCAT TCTTGAAAAA GCTTATGCAA
    AGCTTCATGG CTCTTATGAG GCATTGGAGG GTGGGCTTGT GCAAGATGCT
    CTAGTGGATC TCACAGGAGG AGCTGGTGAA GAGATTGACA TGCGGAGCCC
    CCAAGCGCAG ATTGATCTTG CTAGTGGAAG ATTGTGGTCT CAGTTGTTGC
    ATTTTAAACA AGAGGGCTTT CTTCTTGGTG CTGGAAGTCC TTCTGGCTCG
    GATGCTCATA TTTCATCAAG TGGCATTGTT CAGGGACATG CTTACTCAAT
    TTTGCAGGTA AGAGAAGTTG ATGGCCATAA GCTCGTGCAA ATTAGAAATC
    CGTGGGCAAA TGAAGTTGAA TGGAATGGTC CGTGGTCAGA CTCATCACAA
    GAGTGGACTG AGCGAATGAA GCACAAACTT AAGCATGTTC CACAGTCAAA
    GAATGGGGTA TTCTGGATGT CTTGGCAAGA TTTTCAGATC CACTTTCGGT
    CAATATATGT CTGTCGTGTT TATCCACCCG AGATGCGTTA CTCTGTCCAT
    GGCCAATGGC GTGGTTATAG TGCAGGTGGT TGCCAAGATT ATGACTCATG
    GCATCAAAAT CCTCAGTACC GGCTTAGAGT AACAGGACGG GATGCACTGT
    ATCCTGTACA TGTATTTATT ACCCTTACGC AGGGTGTTGG TTTTTCTAGA
    AAGACAAATG GTTTCCGGAA CTATCAATCT AGCCATGACT CTTCTATGTT
    TTACATTGGA ATGAGGATAC TCAAGACACG GGGCTGCCGT GCTGCTTACA
    ATATCTACAT GCATGAATCA GTGGGTGGAA CAGATTATGT TAACTCAAGG
    GGGATATCAT GTGAATTAGT GTTGGAGCCT TATCCAAAAG GATACACAAT
    TGTGCCCACA ACCATCCATC CTGGAGAGGA AGCACCTTTT GTTTTATCAG
    TTTTTACAAA AGCACCAATC AAGCTAGAAG CTGTTTAATG CAAGATTCAT
    ACTAGATGTG TTCGCTGCTG GTAGCTGTGC CTTGCTGTTG CTGGCCCAGG
    CTCCTTTGGG GTTCAAGTGA TGCAGATTCC AGCTGTGGGT TCAAGAGGAT
    CAGATAATGG TGTTTGCTGC AGCAATATGC CGGTACCTGG GAGATATGAA
    GCAGCAGCTC TGCTCTTGAA CCTGAACATT CTGGGCTTCA TCAGACGCTA
    CATGCAACCG CATAAGCTTG ATTGCTTCCT AACGTGACAG GAAAGGCAAT
    CTTTCTGTCA GCAGGCATGG TGTTGATACA TCAGAATCAT TTGATCGCCG
    TGCATGACTC TGGATGTTTT CTAGTCGATG CTTGTAGATA GTGGTGGCAA
    CTAACATTTA GACCTGGTAG CCCCATCCCG TGTATAGGTA TCCCATGTCA
    CCGTGTACAT ACTATAGAAT TAGATGAGTT AACCTTGTGG TGTCGTTTCC
    TGTTAGCGAA ATAGAGCTCT TGTGCAGCTG GGAAATACCA TTTTAGCATG
    CTGCAGTTTT GCTGATCAAG GCGAGCAGTC GTCGGCCATA GCGTTTTCAT
    TGATTGCCTG TATGTAATCG AAATCTGATC TCATTCAATG GAAGCTATTT
    TTTGGTACC

    Gene models with high sequence identity

    1. AT1G55350.5 [+] show detail - calpain-type cysteine protease family
      E-value: 0; Score: 681.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase C2, calpain 9.1e-55
    HMMPfam Peptidase C2, calpain 2e-27
    HMMSmart Peptidase C2, calpain 1.3e-17
    HMMSmart Peptidase C2, calpain 1.8e-34
    FPrintScan Peptidase C2, calpain 6.6e-29
    FPrintScan Peptidase C2, calpain 6.6e-29
    FPrintScan Peptidase C2, calpain 6.6e-29
    FPrintScan Peptidase C2, calpain 6.6e-29
    superfamily Cysteine proteinases 8.9e-73
    superfamily Peptidase C2, calpain 6.5e-31
    HMMPanther CALPAIN-RELATED 0
    HMMPanther CALPAIN 0
    ProfileScan Peptidase C2, calpain 44.895

    See the detailed result >

    AT1G55350.5

    Model type
    Protein coding
    Short Description
    calpain-type cysteine protease family
    Curator Summary
    Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.
    Computational Description
    DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684).
    Link
    InterPro Scan - TAIR