K24528

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24528

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24528

Determination of introduced cDNA(s)

  • J023007D12 - Rice Full-length cDNAs - Original: J023007D12

    full reading [+] show sequence

    Nucleotide sequence: J023007D12 - full reading 
    GACGATTTCA CGGCGGCGGC GGCGCCGCTT CCTCCTCCTC ATCCACCGCC 
    ACCGCCGCCG CCGCCATGAT CCACCACCTC CAGCGCCGCA TCGTTTCGCT 
    CCTCCTCCTC CACCCAGCAT CGCCTCACCC CGTCGCCGCC ATCTCTCTCG 
    GCCGCCTCCT CTCCACCACC GCGCCCGTTT CCTCCAAACC CTTCGCCGCC 
    GAGGACTACC TCGTCGCCGC CTGCGGCCTC ACCCGAGCCC AAGCAGCCAG 
    GGCTTCGGAG AGGATCTCCC ACCTCAGGTC CCCCTCCAAG CCCGACGCCG 
    TCCTCGCCTT CCTCGCCGGC CTCGGCATCC CGCGCCCCGA CATCGCCACC 
    GCCGTCGCCG CCGACCCGAG GCTGCTGTGC GCCGGCGTGG AGGGAAACCT 
    CGCCAAGCGC GTCGCCGAGC TCGGCGACCT GGGCATCCCG CGCTCCCAGA 
    TCGCGCGCCT CGTCCCCCTC GCCAAGATCC CCTTCCGTAG CAGCTCCCTC 
    GCCACCAACC TCGCCTTCTG GCTCCCGGTG TTCGGCTCGT TGGACAGCAT 
    CCTCAGGGCC CTCAGGAAGA ACTCCTCCCT CCTCAGCGCC AACCTCGACA 
    AGGTGGTGAA GCCGAACCTG GCATTCCTCA AGCAATGCGG GATAGATGCC 
    CGTGATGTTG CCAGCAATCC AAACCTGTAC TCCAGCCGGC TGTTCACCTC 
    GAATCCCATG AAACTCCGGG ACGCCGTGGC GCGAGTGGAG GAGCTAGGCA 
    TGGTCCGCGG CTCGAGGGTG TTCCACCGTG GGCTCGTTGC GGTGGCTTTC 
    CTAAGCAAGG AGGCTGTCGC GACGAAAACA CGGCTGCTGG TGGAGCTTGG 
    GTTTTCGCAG GATGATGTTT CGGTGATCTT CAGGAAGATG CCATCCTTCC 
    TGACCGCATC CGAGAAAAGG ATACGGCGAG CCGTGGGGTT CTTGAAGGGG 
    GATGTTGGTC TGGAGGAACG GTACATTGCG CGAAGGCCGG TATTGCTCTT 
    GTATAGCCTT GAACGGCGGC TATTGCCTCG GTATTACTTG CTCAAGGTCC 
    TCAGGACAAA GGGATTGCTG GATTGCAAGC TGTGTTACTA CTCAACAGCC 
    GCACTGGGCG AGAAGAAGTT TATAGAAAGG TTTGTGCATC CTTATGAGGA 
    CCACATTGCA GGCCTTGCTG ATGCTTATGG CTCTATTTGT TCCGGGAAAG 
    TAGCAAATGG AGTTGCTCCA TTGCTTGGTT TGTAGACTGA AATTGACGGA 
    TGTAAAAGTT TCTGCTGGGG ATTTTGGCTA GATCGTCGCA CAGGAATGCA 
    AAATATTAAG GTTTGTGGAC CCTTGGATCA TCTTGTACTA TGTTAAAGCT 
    TGTGCTGAAG AAGTATGTAG GAGTAGGTTT GTTACTTTTA TCTTGTAGCT 
    CTGATGGTTG AGGATGACAA TGGTTGATGG CAATGGATTT GG

    Gene models with high sequence identity

    1. AT1G21150.1 [+] show detail - Mitochondrial transcription termination factor family protein
      E-value: 2e-19; Score: 94.40

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 0.00000000013
    FPrintScan PRICHEXTENSN 0.00000000013
    FPrintScan PRICHEXTENSN 0.00000000013
    FPrintScan PRICHEXTENSN 0.00000000013
    HMMSmart Mitochodrial transcription termination factor-related 20
    HMMSmart Mitochodrial transcription termination factor-related 0.012
    HMMSmart Mitochodrial transcription termination factor-related 0.11
    HMMSmart Mitochodrial transcription termination factor-related 11
    HMMPfam Mitochodrial transcription termination factor-related 6.4e-20

    See the detailed result >

    AT1G21150.1

    Model type
    Protein coding
    Short Description
    Mitochondrial transcription termination factor family protein
    Computational Description
    Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 922 Blast hits to 791 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 903; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR