K24529

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24529

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: K24529

Determination of introduced cDNA(s)

  • J033064B21 - Rice Full-length cDNAs - Original: J033064B21

    full reading [+] show sequence

    Nucleotide sequence: J033064B21 - full reading 
    GGGATCCCCC TCTCCCATCT CCCATCTCAC CACCTCGGCC GCCGCCGCCG 
    CCGCCGCCGC CGCCATCGCC GCAGCGATCT GTCACAATCA CCACCGCCAC 
    CGGCAATGCC CACCGCGTCA TAGGTCGAGG CGCGCCATGC CCCCGCCGAC 
    CCCGCTGGCC CGCCTCCTCG CGGCCATCTC CGCCGCCGCC TCCTCGCCCG 
    CCGACCTCCG CCGCCTCTCC CACCGCGTCC TGTCCCCCTC CGCGCCTCTT 
    CCCCCTCTCC GCTGCCTCAA CACCCTCCTC ATGGCCCTCG CACGCCACCG 
    TATGTTCCCG GACATGGAGT CCCTCGCCTC CCGCATGCCC GCCCGCAACC 
    TCCGCACGTA CACCACCCTC ATCAACGCCT ACTGCCTCGC CGGCGACATC 
    CCCGCCGCGA AGCAGCATCT CACCTCCCTC CTCCACGCGG GACTCGCGCC 
    GGACTCGTAC GCGTACACCT CTTTCGTCCT TGGATATTGC CGCGCAGGGA 
    TGCTGACGCA CGCCTGCCGG GTGTTCGTGC TAATGCCGCT CCGGGGATGC 
    CTGCGGACAG CGTTCACGTA CACGGCGCTG CTCCATGGGC TGCTTGGCGC 
    AGGGATGGTT CGTGAGGCTA TGGCAGTGTT CGTTGGGATG AGGGCGGACA 
    GCTGTGCTCC GGATACCCAT GTGTACGCGA CGATGGTGCA CGGGCTGTGT 
    GAGGCTGGAC GAACTGAGGA GGCTGAGGTG CTGCTTGAAG AGGCAATGTC 
    TAACGGATTT GAGCCAAATA TTGTTGTCTA CAATGCGCTG ATTGATGGCT 
    ACTGCAATGC TGGAGAAATG GAACATGCAC TTAAGGTCTT CGAGGGCATG 
    GATGGCAACC GGTGCTCCCC AAATGTGCGA ACATACACCG AGCTGATACA 
    TGGGTTGTGC AAATCAGGGA AGGTGGAAAG GGCCATGGTG CTGTTCAGTC 
    GGATGGTTGA GGCAGGTTTG GAGCCCAATG TAGTGACATA CACAGCTTTA 
    ATTCAGGGGC AGTGCAATGA GGGTCACCTG CAATGTGCTT TTAGGCTTCT 
    TCATTTGATG GAGACTAATG GGCTGGTTCC AAACGACTGG ACTTTCTCGG 
    TGTTAATTGA TGCTCTCTGC AAGCGTGAGA AGGTTGAGGA GGCCCAGTTG 
    TTTCTTGGGT CTCTTGTCAA GAAGGGAGTT AAGGTGAATG AGGTTGTTTA 
    CACTAGCTTG ATAGATGGAT TGTGCAAGAC AGGAAAGATT GATGCTGCTG 
    ATGAATTGAT GCAGAAAATG ATCTCAGAGG GGTTTGTGCC AGATGCCCAC 
    TCATACAGTT CACTTATTGA TGGATTATGC AGGCAAAAGA AGTTGTCGCA 
    AGCAACATTG ATGTTGGAAG ATATGATGGA GAAGGGAATA CAGGCAAGTC 
    CTGTAACATA TACCATTATA ATTGATGAAT TAGTCAGGGA GGTAGGATCA 
    GAAGGTCCAA AGAAAATATT CGACAAGATG ATCGCGACAG GTATCAATCC 
    TGATATTGTA ACGTACACAG TATTTGTCCG CTCCTACTGT GAAGAGGGGA 
    GAATGGAAGA TGCTGAATCC ATGATAGTTC AAATGGTTGA TCGTGGTGTT 
    TTCCCTAACC TAGTCACGTA TAACACTTTG ATTAGAGGGT ATGCAAATCT 
    AGGACTAGTC AGTCAAGCAT TTTCAACTTT TGAAGTAATG GTTGGTAAGG 
    GGTGGAAACC AAACGAGGAC TCCTACACAG TTCTTCTCAG ACTTGTGGTA 
    AAGAAAAGTT CCTCTGATAA CTCTGTTGAT ATATGGAAAA TAGCAGACAT 
    GAAAGATCTC CAGGTACTTT TGGAGGACAT CACTGAGCGT CAGTTGCCAC 
    TAGCCGCCGA TATTTACAGT TGTTTCATTA GATGTTTATG CCGAGTTGAC 
    AGATTGGAGG AAGCAAAACA TTTTTTTATG GGGATGCAGA ATGCTAACTT 
    GACCCCTAGC GAGGATGTAT ATACTTCGAT AATAGACTGC TGTTGCAGAT 
    TAAAAATACT AACAGATGCT TTGACATTGC TTGATTCAAT GACGAAAAGT 
    GGTTATTTGC CACATTTAGA ATCTTATAGA ATTATAATTT CTTCTCTTTG 
    TGAGGGAGGA AACTTTCGCA CTGCTAAGGA AGTTTTTGGT GATTTGTTAC 
    TGAAGGAATC CAATTATGAT GAGATTGTAT GGAAAATTCT GATTTATGGC 
    CTATTACAGA AGGGCAGTGT TGCTGAGTTC TCAAGTCTGC TCTCCGTCAT 
    GAAGGAACAT GGTTACCAAC CTAGTAACAC AATTAATGCC ATGATTACAG 
    GTGAAATAAC AGTTACAAAT GAAGTTCAGG AAATCGCTAG ATAAATTTGG 
    AGAAACTAAC CAACTGTTGT GTTGATGGTC TACAGCAGAA GGTGTGCAAC 
    TCAACATTGT TGCCTTTCTG TGCACAGTGA AGCAACAGAT CCTCATGGAC 
    TACTTCCATT TGTGGCATCA GCATCGGGCT CAGTCGAGCC AGGCGCAGTA 
    CCGTCATTCG AGCTTGAGAA CACGTGGACA TGCGAGTGGT CAAGCTCATG 
    GGCATGCTGA CGGCCATCAA GCTCGAGCCT CGAGGACGGT GTCCGGCTAG 
    CATTCGAGCT TGAGAAAGGA GAGGGGGCTG GAGGAGGAAG AAGGAGGAAA 
    AGTTGGTTAT GTGTCAATCC ACTGAAGCAA GCGGGCTATT TGAGAAGATA 
    GGGTAGCTAT ACTTTCAGTG GCTCCAGAAA CTGCTAGACT TGGATATGTG 
    AAATTAACAT CCATTACGAA TTATCTGATC CCGGAGCTAG CATTCTAGTT 
    AAATTGCTGT GACTGGCCAA ATAACGATCG GTACATACTC AATTCTATTG 
    AGAACTCAAC TTCATCAAAA TTTGGTGGAA GAGCTAGAGC AATTTTCAGT 
    CAGTTTGCAC ACGCCAAGGT AGCTGTGATC ACAGGGACTA AGAAGGATCA 
    ATTTCCAGGT CAAAAGAGAT ATCCATATAC ATTATATATC CAGAAGTTGA 
    AGTGTAATTG CTTGTGAAAA TGGTTCGCAG GAGACTGGAA CATGATGAAA 
    TTACTAGATT CTACTTTTGT TATGGTGAAG AACATATACA TAGAATGATG 
    GCTGAGTATG TTCTGAGAAG GTCACTCCAA AAATAACTGG ATCAGATAGA 
    TGAGGTGATC GACTCCTTAA AAATGCTACA GATGTTTTTC ATGGTCCATG 
    CACTGACTAA GCTTCGTTTA TTTTCAAGAG TTTCAAGATA TGTCATGAAA 
    GGCAGCATGA TGGAATATTG GCCCCCATTT TGCAGAACTT GGGCGAGGTT 
    CTTGGAAAGT TCTGAACCTT TGCCTATATG AACTCTGGGG AAGTTAGTAT 
    TAAGCTCTAT ATAGTAAATG ATATTCACAG CATTCAACTT GTGTTAATAG 
    TTTGCAGGCG TGGAATATTC TTTTTGACCG GAACATGGAC TAATTATTTG 
    ACAATTGTAT ATAGAGATTC AATCAATACA TTCTTGAC

    Gene models with high sequence identity

    1. AT5G65560.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 5e-136; Score: 483.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pentatricopeptide repeat 0.00013
    HMMTigr Pentatricopeptide repeat 0.0000073
    HMMTigr Pentatricopeptide repeat 0.00000003
    HMMTigr Pentatricopeptide repeat 0.0000000022
    HMMTigr Pentatricopeptide repeat 0.000000000028
    HMMTigr Pentatricopeptide repeat 0.00000000011
    HMMTigr Pentatricopeptide repeat 0.00000023
    HMMTigr Pentatricopeptide repeat 0.0001
    HMMTigr Pentatricopeptide repeat 0.000000000039
    HMMTigr Pentatricopeptide repeat 0.000000068
    HMMTigr Pentatricopeptide repeat 0.15
    HMMTigr Pentatricopeptide repeat 0.0000000034
    HMMTigr Pentatricopeptide repeat 0.0000000063
    HMMTigr Pentatricopeptide repeat 0.00000057
    HMMTigr Pentatricopeptide repeat 0.0000075
    HMMTigr Pentatricopeptide repeat 0.00031
    HMMTigr Pentatricopeptide repeat 0.0049
    superfamily TPR-like 1.1e-22
    superfamily TPR-like 9.6e-16
    ProfileScan Pentatricopeptide repeat 10.03
    ProfileScan Pentatricopeptide repeat 5.579
    ProfileScan Pentatricopeptide repeat 9.876
    ProfileScan Pentatricopeptide repeat 10.457
    ProfileScan Pentatricopeptide repeat 12.408
    ProfileScan Pentatricopeptide repeat 12.847
    ProfileScan Pentatricopeptide repeat 13.636
    ProfileScan Pentatricopeptide repeat 11.301
    ProfileScan Pentatricopeptide repeat 13.241
    ProfileScan Pentatricopeptide repeat 9.778
    ProfileScan Pentatricopeptide repeat 11.619
    ProfileScan Pentatricopeptide repeat 8.561
    ProfileScan Pentatricopeptide repeat 12.715
    ProfileScan Pentatricopeptide repeat 12.397
    ProfileScan Pentatricopeptide repeat 5.514
    ProfileScan Pentatricopeptide repeat 9.624
    ProfileScan Pentatricopeptide repeat 10.578
    ProfileScan Pentatricopeptide repeat 7.311
    ProfileScan Pentatricopeptide repeat 9.514
    HMMPfam Pentatricopeptide repeat 0.0068
    HMMPfam Pentatricopeptide repeat 0.00064
    HMMPfam Pentatricopeptide repeat 0.00067
    HMMPfam Pentatricopeptide repeat 0.00042
    HMMPfam Pentatricopeptide repeat 0.000000026
    HMMPfam Pentatricopeptide repeat 0.00000016
    HMMPfam Pentatricopeptide repeat 0.00012
    HMMPfam Pentatricopeptide repeat 0.00083
    HMMPfam Pentatricopeptide repeat 0.000000041
    HMMPfam Pentatricopeptide repeat 0.000023
    HMMPfam Pentatricopeptide repeat 0.0000033
    HMMPfam Pentatricopeptide repeat 0.0000012
    HMMPfam Pentatricopeptide repeat 0.014
    HMMPfam Pentatricopeptide repeat 0.001
    HMMPfam Pentatricopeptide repeat 0.14
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2e-168

    See the detailed result >

    AT5G65560.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G77340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR